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PLM2_30_b1_sep16_scaffold_2263_6

Organism: PLM2_30_b1_sep16_Chthoniobacter_flavus_55_21

near complete RP 44 / 55 MC: 1 BSCG 46 / 51 ASCG 12 / 38
Location: comp(5284..8616)

Top 3 Functional Annotations

Value Algorithm Source
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 56.9
  • Coverage: 1118.0
  • Bit_score: 1189
  • Evalue 0.0
Transcription-repair-coupling factor Tax=Chthoniobacter flavus Ellin428 RepID=B4CX01_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 56.9
  • Coverage: 1118.0
  • Bit_score: 1189
  • Evalue 0.0
mfd; transcription-repair coupling factor mfd (superfamily II helicase) similarity KEGG
DB: KEGG
  • Identity: 54.0
  • Coverage: 645.0
  • Bit_score: 712
  • Evalue 1.20e-202

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Taxonomy

Chthoniobacter flavus → Chthoniobacter → Spartobacteria → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 3333
GTGGAAAAACCAATCCGCACCGAGCTTCTGGAACGTGTCGCGGCGAGCGAACCTATCGCCCGCAAGCTTCGGGCACTGCAAAAGGCGCAATGGCCGGTACAATTTTCGCTCGTCATCCAGCCGGCGCAGGCGTTTTTGGCCGCTGTAATCGCGCAGGCGTGCCATCGGCCTGTACCGCGCGATAGTCAGTCTGCTGATTCCACGATCTGGATCCTTTGTCCCAGCGTTCATTCTCAAGAATTGTTTTACGAAAGTTTGCTCAACTGGCAGCCAGACGCGCTTTTCCTGCCGGAAGCGGAGCTTGCAGCCGTCGAAAATGTCTTACCCGATCCGGAAATCGCGGCAGAACGACTTGCGCTCTTGACGGAAATCGAGCGCGGCACTCGTCCCAGTATCATCGTCGCGACGCGCGCAAGTCTCGATCAACCCGCGCCAAAACGCGGCACGCTCCAATCTGCTGTTACCAAACTTCGGCGCGGCGCAAACGCAAAGATGGAACAGCTTCTCGATCAACTCGTGGGCAACGGTTATGAGCGCGTCGCGCAGGTAACCACTCGAGGACAGTTCGCTGTACGCGGCGGTATTGTTGATCTCTATTCGTGGCACGCGCCGTTGCCGTTCCGGCTGGAATTTTCCGGCGACCAAATCGAATCACTGCGCGAGTTCGACATAGATAGCCAAACTGCAGTGCGCGATTTGGGTTCGATCGATATTTTGCTCGGAGCGATCGACGATCAGAGCGGTTTCGTTCGCGAATACATCGAGCCAAATCATCTGATTATCGATATCGAACCTGCAATGGAGGGCGGAGCTCCAGCGACGCCGGCCTCGCGGGAGCTCGCCTCTCCACAAATCCAACTCAGCGAGGGCTGGATTGAAACCGGTCCGGAGGATTTCAGCAGCGCGTTCCAGGATTGTGAGATCGGAGAGTTTGCGGCCGGCGATCTCGTGCTCGCTGAGGCAAAACGCGCGCAGTTTGTCCAGCATTTGGAAGAATGGCGCGCGAACAACGCAAGAATCGTCATTTATTTTCAAACCGAGGGCGAGATTGAACGCTTTCGGGAAATCATGGCCGGCGCCATTGACGGCATCGATTTTGTCGAAGGAGCGCTCGGGCGGGGATTTTGCTTTCCCGCAGCCAATCTCGTCGTCCTTTCCGCCGCGGAGTTGTTTGGACGATTCGCCGTCCATGCGCGCAGGCATTTGCGTCGTGCGGAGCGCCATCGCGCGCAGATCGATTTTAGCGAACTAAACGAAGGCGACTTGGTCGTGCATCTCGAACACGGCATCGGACGATTCCTCGGACTCATGAAAATTGGTAGGGCGCGACCGCCGGGCGCGCCGGATACTGTGGTGGCGGAAGGCCTGGCAGTCGGTCCCTACCAGGATGGAGCCCAGGAAGTTCTCGCACTGGAATTTGCAGATGAAGCGAAGCTCTATGTGCCGCTCGAGCAAGCGTACCTCGTTTCGCGCTATGTTGGCGCGGGAAAAAAATCGCCGCCGCTAAGCTCACTTGGCGATGGGAAATGGGCGCGCGCCAAAGTAAAAGCCGCAGCTTCCATTTTCGATTACGCCGGCAAAATGCTGGCGATCCAGGCGGAGAGGCAAATGCACTCCGGTTACGCCTTCGCCGCCGACACAAAATGGCAGGCAGAATTTGAGCGGTCGTTCCCGTTTCGCGAAACACCGGACCAAATGAAGGCGATTATTGATACGAAGATTGACATGGAAGGTCCCCGGCCGATGGACCGCCTGATCTGTGGCGATGTCGGTTTCGGCAAAACCGAAGTGGCAGTGCGGGCCGCGTTCAAGGCGGTGATGGACGGCAAACAAGTAGCCGTGCTAGCGCCGACTACCGTGCTGGCTCAACAACATTTCGAGGTGTTCCGGCAGCGCATGCTCGATTACCCGGTGCGCATCGAAATGCTCAGCCGCTTTCGTTCGCGATCCGAACAAAAGAAAGTCTTGCGACTGCTGCGCGAAGGCGGCGTTGATATCATCATTGGCACTCATCGGCTTATCTCCGGCGACCTCGTATTCAAAGATCTCGGCCTGGTAGTGATCGACGAGGAACAGCGTTTTGGAGTCCTACACAAGGAGAAGTTCAAAGAGCTCTTCAAGCTGGTCGATGTGCTGACACTTTCGGCCACACCTATTCCACGCACTCTCTACCTTTCACTGGTCGGCGCAAAAGATATGTCCACGATTGAGACTCCACCGCTTAACCGGCTGCCAGTGGAAACAGTAGTCTCGGCGTACGATGAGCGAATCATTCGTGCGACGATCGATCGTGAACTGGAGCGGCAGGGACAAGTATTCTTTTTGCACAATCGTGTAGCGACCATAGAGCGGGCGCGGGACCGGATCGTACACCTTTGCCCGCAGGCCAGAGTTGAAATTGGCCATGGACAAATGGACGCGGACGAACTGGAAGCGGTGATGGCGCGATTCATAGCCGGCAAGACCGACGTGCTCGTTTGCACGACGATCATCGAGAGCGGTCTCGATATTCCGAACGCGAACACGATTATCATCGACCGCGCGGATCAGTTTGGGCTCGCGGATTTGTATCAATTGCGCGGACGCGTCGGCCGAGCCGAGCACAAGGCATACGCCTATCTGCTTCTTCCGCGCGAGATGATGACAATCGGCGCCGCGCGCAAGCGGATCAGCGCCATCAAACAGTACAGTTCGCTCGGCGCCGGTTTTCGCATCGCCATGCGCGATTTGGAGATTCGCGGCGCAGGCAGCATTCTGGGCACGGCGCAGAGCGGCCACATTGTCGCGGTCGGTTTTGATTTATATTGTCAGTTGCTCAAGCAGGCAGTGGCACAGCTCAAAGGCGAAAAGCCACGGCTTCGGCTCGAGGTCGATTTACAACTCGATTTCGTCGTCACAAATGAAGCGGAGTTCGTGCCGGCTGAAGCAAGGAGCGGCGGTCTCCAGCCCGCCGAGGCGTTTGCAAAAGAGCCGGCACGTGACCGCATCCCCGCTTTCATTCCAGTCACGTACATCAGCGATCCTGCGCTACGAATACGAGCCTATCGCGATGTCGCGGAAATCACTTCGCATGAGCAATTGGATCGACTCCGCCGCGAATGGCGCGACCGGTTTGGCTCGTTCCCTCCGCCTATTGACAATTTGTTTGCTCTTATCAAAATCAAGCTCGCCGCGGCGAAATCAGGAGTGACTCGGGTGGAAGTACGTGAGCGCAAATTGATGTTAACGCGGCACGGGGATTTTATCCTTGTCGCGGGCAAATTCCCCCGTTTAGTTGCAGCGAAACCCGAGGAGCGCCTCGGGGAAATTGTGGAACTGATCAAGAAATTATGA
PROTEIN sequence
Length: 1111
VEKPIRTELLERVAASEPIARKLRALQKAQWPVQFSLVIQPAQAFLAAVIAQACHRPVPRDSQSADSTIWILCPSVHSQELFYESLLNWQPDALFLPEAELAAVENVLPDPEIAAERLALLTEIERGTRPSIIVATRASLDQPAPKRGTLQSAVTKLRRGANAKMEQLLDQLVGNGYERVAQVTTRGQFAVRGGIVDLYSWHAPLPFRLEFSGDQIESLREFDIDSQTAVRDLGSIDILLGAIDDQSGFVREYIEPNHLIIDIEPAMEGGAPATPASRELASPQIQLSEGWIETGPEDFSSAFQDCEIGEFAAGDLVLAEAKRAQFVQHLEEWRANNARIVIYFQTEGEIERFREIMAGAIDGIDFVEGALGRGFCFPAANLVVLSAAELFGRFAVHARRHLRRAERHRAQIDFSELNEGDLVVHLEHGIGRFLGLMKIGRARPPGAPDTVVAEGLAVGPYQDGAQEVLALEFADEAKLYVPLEQAYLVSRYVGAGKKSPPLSSLGDGKWARAKVKAAASIFDYAGKMLAIQAERQMHSGYAFAADTKWQAEFERSFPFRETPDQMKAIIDTKIDMEGPRPMDRLICGDVGFGKTEVAVRAAFKAVMDGKQVAVLAPTTVLAQQHFEVFRQRMLDYPVRIEMLSRFRSRSEQKKVLRLLREGGVDIIIGTHRLISGDLVFKDLGLVVIDEEQRFGVLHKEKFKELFKLVDVLTLSATPIPRTLYLSLVGAKDMSTIETPPLNRLPVETVVSAYDERIIRATIDRELERQGQVFFLHNRVATIERARDRIVHLCPQARVEIGHGQMDADELEAVMARFIAGKTDVLVCTTIIESGLDIPNANTIIIDRADQFGLADLYQLRGRVGRAEHKAYAYLLLPREMMTIGAARKRISAIKQYSSLGAGFRIAMRDLEIRGAGSILGTAQSGHIVAVGFDLYCQLLKQAVAQLKGEKPRLRLEVDLQLDFVVTNEAEFVPAEARSGGLQPAEAFAKEPARDRIPAFIPVTYISDPALRIRAYRDVAEITSHEQLDRLRREWRDRFGSFPPPIDNLFALIKIKLAAAKSGVTRVEVRERKLMLTRHGDFILVAGKFPRLVAAKPEERLGEIVELIKKL*