ggKbase home page

You do not have permission to do that.

Please email help@ggkbase.berkeley.edu for help.

PLM2_30_coex_sep16_scaffold_41543_3

Organism: PLM2_30_coex_sep16_Alphaproteobacteria_Rhizobiales_63_15

near complete RP 43 / 55 MC: 8 BSCG 44 / 51 MC: 1 ASCG 7 / 38
Location: comp(1542..2234)

Top 3 Functional Annotations

Value Algorithm Source
Peptide/nickel transport system permease Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IQN5_9BRAD similarity UNIREF
DB: UNIREF100
  • Identity: 86.5
  • Coverage: 230.0
  • Bit_score: 390
  • Evalue 7.70e-106
transcriptional regulatory protein TetR family similarity KEGG
DB: KEGG
  • Identity: 81.6
  • Coverage: 217.0
  • Bit_score: 350
  • Evalue 3.30e-94

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Bradyrhizobium sp. DFCI-1 → Bradyrhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 693
ATGTCGAGCGATCGCACCCGGTCTGCCATCCTTGCCGCCGCCGAACGGCTGTACGCCGATCGCGGCTTCGGCGACGTGACGCTGCGCGACATCGTCGCCGAAGCGAACGTCAATCTCGCCGCGGTGAATTATCATTTCGGCTCCAAGGACGAGTTGATCGCGGAACTGTTCGTCACCCGCAGCCTCGCCACCAACCGCGAGCGGCTCAACGAGTTGAAGCTTGCCGAGGAAAAAGGCGGCGGCCGCGCCCCGATCGATGCCATTTTGCACGCGCTGGTGGGCCCTACCCTGCGCGGCTGCCTCGGCCCCGACCGCGAAGGCTCGACGGCGGCACGCTTCATGATCCGCGCCTCGATTGAATCGGTGCCGCCGATCCGCCGCATCAAGAACCGCGAGGTCGACCATTTGCGGAAATTCGTCGCCGCGATGCGCCGCGCGATGCCCGGCCGCGACGACGCCGATCTCTACTGGGGCCTGCACTTCGCGCTCGCGATGTCGCATCACACCATCCGGGAAAAAGAGCGGCTGACCAGATTGTCGGAAGGACAATGCGATCTCAACGACGTGGAGGCCATCGTCGACCGCGTGGTTTCGGTTTCAGTGATGGCGCTCACGGGCAGCGAGATGCCGGCAAAGAAGGCGCCGGCTCGGCCGTCGGTGCCGCATGGAAGGCTGACCCGGCAAGACCTCTGA
PROTEIN sequence
Length: 231
MSSDRTRSAILAAAERLYADRGFGDVTLRDIVAEANVNLAAVNYHFGSKDELIAELFVTRSLATNRERLNELKLAEEKGGGRAPIDAILHALVGPTLRGCLGPDREGSTAARFMIRASIESVPPIRRIKNREVDHLRKFVAAMRRAMPGRDDADLYWGLHFALAMSHHTIREKERLTRLSEGQCDLNDVEAIVDRVVSVSVMALTGSEMPAKKAPARPSVPHGRLTRQDL*