ggKbase home page

PLM2_5_b1_sep16_scaffold_20

Search features with annotation key words

Displaying items 31-60 of 105 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM2_5_b1_sep16_scaffold_20_30
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(20172..21152)
DNA (981bp) protein (327aa)
Branched-chain alpha-keto acid dehydrogenase E1 component Tax=Solibacter usitatus (strain Ellin6076) RepID=Q02C51_SOLUE
Transketolase central region
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM2_5_b1_sep16_scaffold_20_31
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(21152..21634)
DNA (483bp) protein (161aa)
TonB family protein
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM2_5_b1_sep16_scaffold_20_32
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(21631..22701)
DNA (1071bp) protein (357aa)
Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LHD8_CHLTF
dehydrogenase E1 component
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM2_5_b1_sep16_scaffold_20_33
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

22730..22945
DNA (216bp) protein (72aa)
mercuric reductase
Copper ion binding protein bin=GWD2_Nitrospirae-related_57_8 species=unknown genus=Thermoanaerobacterium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM2_5_b1_sep16_scaffold_20_34
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(22942..23232)
DNA (291bp) protein (97aa)
Uncharacterized protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A960_GEMAT
hypothetical protein
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM2_5_b1_sep16_scaffold_20_35
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(23232..25802)
DNA (2571bp) protein (857aa)
tmr:Tmar_1561 ATPase P (EC:3.6.3.4); K01533 Cu2+-exporting ATPase [EC:3.6.3.4] bin=RAAC39 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=RAAC39 organism_group=Ignavibacteria
ATPase P (EC:3.6.3.4)
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM2_5_b1_sep16_scaffold_20_36
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(25795..26217)
DNA (423bp) protein (141aa)
copper-binding protein Tax=Aminicenantes bacterium SCGC AAA252-F08 RepID=UPI0003B761CF
copper-exporting ATPase
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM2_5_b1_sep16_scaffold_20_37
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(26228..28723)
DNA (2496bp) protein (832aa)
hppA; membrane-bound proton-translocating pyrophosphatase (EC:3.6.1.1); K15987 K(+)-stimulated pyrophosphate-energized sodium pump [EC:3.6.1.1] bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hppA; membrane-bound proton-translocating pyrophosphatase
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM2_5_b1_sep16_scaffold_20_38
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(28764..30092)
DNA (1329bp) protein (443aa)
Inositol-3-phosphate synthase Tax=mine drainage metagenome RepID=E6QI23_9ZZZZ
Myo-inositol-1-phosphate synthase
Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
PLM2_5_b1_sep16_scaffold_20_39
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(30095..30778)
DNA (684bp) protein (228aa)
Putative phosphatidylinositol synthase Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A963_GEMAT
CDP-alcohol phosphatidyltransferase
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM2_5_b1_sep16_scaffold_20_40
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(30829..32022)
DNA (1194bp) protein (398aa)
hypothetical protein Tax=Bacillus acidiproducens RepID=UPI00037B6996
hypothetical protein
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM2_5_b1_sep16_scaffold_20_41
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

32026..33777
DNA (1752bp) protein (584aa)
Beta-N-acetylhexosaminidase., Beta-lactamase Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SJI0_RHOMR
glycoside hydrolase family 3 domain protein
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM2_5_b1_sep16_scaffold_20_42
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

33774..34961
DNA (1188bp) protein (396aa)
Beta-lactamase family protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A965_GEMAT
beta-lactamase family protein
Beta-lactamase family protein {ECO:0000313|EMBL:BAH39042.1}; species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC; 100505).;"
PLM2_5_b1_sep16_scaffold_20_43
RBG_16_Ignavibacteria_35_7_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(34945..36699)
DNA (1755bp) protein (585aa)
Na+/solute symporter Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IN77_KORVE
Na+/solute symporter
Tax=RBG_16_Ignavibacteria_35_7_curated
PLM2_5_b1_sep16_scaffold_20_44
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

36808..37164
DNA (357bp) protein (119aa)
Putative iron-sulfur cluster insertion protein ErpA Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A966_GEMAT
iron-sulfur cluster assembly accessory protein
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM2_5_b1_sep16_scaffold_20_45
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

37238..38713
DNA (1476bp) protein (492aa)
Putative sodium/solute symporter Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A968_GEMAT
SSS sodium solute transporter superfamily
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM2_5_b1_sep16_scaffold_20_46
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

38710..39624
DNA (915bp) protein (305aa)
Putative N-acetylglucosamine kinase Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A969_GEMAT
ATPase BadF/BadG/BcrA/BcrD type
ATPase BadF/BadG/BcrA/BcrD type {ECO:0000313|EMBL:AHG91146.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM2_5_b1_sep16_scaffold_20_47
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(39621..41132)
DNA (1512bp) protein (504aa)
Putative permease Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A971_GEMAT
putative permease
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
PLM2_5_b1_sep16_scaffold_20_48
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(41161..41874)
DNA (714bp) protein (238aa)
Uncharacterized protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A972_GEMAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG91151.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM2_5_b1_sep16_scaffold_20_49
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(41957..42391)
DNA (435bp) protein (145aa)
Putative biopolymer transport protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A973_GEMAT
putative biopolymer transport protein
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM2_5_b1_sep16_scaffold_20_50
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(42395..42865)
DNA (471bp) protein (157aa)
Putative biopolymer transport protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A974_GEMAT
Biopolymer transport protein ExbD/TolR
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM2_5_b1_sep16_scaffold_20_51
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(42874..43617)
DNA (744bp) protein (248aa)
Putative biopolymer transport protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A975_GEMAT
MotA/TolQ/ExbB proton channel
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM2_5_b1_sep16_scaffold_20_52
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(43661..44338)
DNA (678bp) protein (226aa)
Putative TonB protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A976_GEMAT
tonB; putative TonB protein
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM2_5_b1_sep16_scaffold_20_53
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(44442..45053)
DNA (612bp) protein (204aa)
Uncharacterized protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABH1_GEMAT
TonB family protein
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM2_5_b1_sep16_scaffold_20_54
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(45150..46601)
DNA (1452bp) protein (484aa)
Two-component histidine kinase Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A977_GEMAT
two-component histidine kinase
Tax=GWC2_Gemmatimonadetes_71_10_curated
PLM2_5_b1_sep16_scaffold_20_55
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(46603..47271)
DNA (669bp) protein (223aa)
OmpR family two-component response regulator Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A978_GEMAT
transcriptional regulator domain-containing protein
Tax=GWC2_Gemmatimonadetes_71_10_curated
PLM2_5_b1_sep16_scaffold_20_56
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(47268..48824)
DNA (1557bp) protein (519aa)
Two-component histidine kinase Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A980_GEMAT
PAS sensor protein
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM2_5_b1_sep16_scaffold_20_57
unknown

Not on your lists

comp(48836..49432)
DNA (597bp) protein (199aa)

This feature has no annotations

PLM2_5_b1_sep16_scaffold_20_58
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

49503..52163
DNA (2661bp) protein (887aa)
Alpha-galactosidase Tax=uncultured Thermotogales bacterium RepID=Q1EM48_9BACT
Glycoside hydrolase, clan GH-D
Tax=GWC2_Gemmatimonadetes_71_10_curated
PLM2_5_b1_sep16_scaffold_20_59
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(52126..52893)
DNA (768bp) protein (256aa)
ABC-type sugar transport system, permease component bin=GWC2_Ignavibacteria_56_12 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
sugar ABC transporter permease
Tax=GWC2_Gemmatimonadetes_71_10_curated
Displaying items 31-60 of 105 in total

View Taxonomy