ggKbase home page

PLM2_5_b1_sep16_scaffold_7690_4

Organism: PLM2_5_b1_sep16_Acidobacteria_Holophagae_53_17

near complete RP 47 / 55 MC: 3 BSCG 45 / 51 MC: 1 ASCG 12 / 38 MC: 1
Location: 5129..6958

Top 3 Functional Annotations

Value Algorithm Source
Soluble lytic murein transglycosylase-like protein {ECO:0000313|EMBL:CDM66559.1}; EC=3.2.1.- {ECO:0000313|EMBL:CDM66559.1};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 52.2
  • Coverage: 462.0
  • Bit_score: 473
  • Evalue 4.40e-130
lytic transglycosylase, catalytic; K08307 membrane-bound lytic murein transglycosylase D [EC:3.2.1.-] bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1? similarity UNIREF
DB: UNIREF100
  • Identity: 33.1
  • Coverage: 475.0
  • Bit_score: 244
  • Evalue 1.80e-61
lytic transglycosylase, SLT, LysM, LysM, LysM and LysM domain-containing similarity KEGG
DB: KEGG
  • Identity: 30.8
  • Coverage: 509.0
  • Bit_score: 235
  • Evalue 3.10e-59

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Pyrinomonas methylaliphatogenes → Pyrinomonas → Acidobacteria → Bacteria

Sequences

DNA sequence
Length: 1830
ATGAAATTCCCCCTTCACAAGGTTTCTTGTTGTATAGCTTTACTTTTTTTACTTTTTAATTCGATCGTCAGTGCCCAGGTCACAAGCACCACGTCCAGCAACGACACCCGTCCTGCTGAGATATTGCGGGCCGAGGACGCGGTAAACAAGGTCCTGCTCGATTCCGGAATTTTGTTCCGCGAGGGGATGCTTGCCTACGAAGACAACCACCTCTCGGACGCCGGTGAGAAGTTTAATAAGTCGGTCGAGGTCTTTCTCTATTCAACCCTAAACATCCAGCGCGAGCAGAAACTGCAGGGCTGTTACAACCAGCTTATAGAGACGATCTATCGCATTGAGTTCCCTGCCGATAACCAATTGCCCCAGGTCAGGAACCTGACCCAGACCTGCAACTGGAACAATCTCGACAAATCTTTAAGTATCGATAACGATCTGGCCGACAAGATCACGGCGATGGCAAAAACATCCGTGGCAAAGCCGGCTGCTGCAGGCACCGCGACCACTGTCGTTGCAAACGGGACAACCGCGGCCAACACGGTAAAAGTCGGGTTTAATACGCAGGAGTTTGAGCCCTCGCCTTTGGATGACCTGTCCAAACTTGAGCTCACACCTGACGAACAGCAGATCGACAGCAACCCGGTCGCCCAGCAGCAATATCAATACATTCAGTACGCAGTAGCTAACAAGTCGCTTGGATTCTCGTTCCAGGTTCACCCGATGATCCAGCAGTTCATCAACTACTATCGCGGCCGCGGCCGGACAACGATGGAAGTTGGTTTGTACCGCTCGGGAATGTTTATGCGGATGGCCCGCAGGATATTCCGCGAAGAGGGTGTTCCCGAGAACGTGGCATGGCTCGGCCAGGTCGAGAGTGCGTGGAAGCCGTCGGCGCTGTCCAGTGCGGCAGCATCCGGTCTCTGGCAGTTTATCCCTGGAACGGGATCACGGTTTGGCCTGCAGCGTACAGCGTATGTCGATGAGCGAAATAGCTTTGACGAGGCGACACGTGCGTCGGCCCGTTACCTCAAGTTCCTTGCAAACCGTTACCACGGCAATTGGGAACTGGCGATGGCAGCGTACAACTCGGGCGAGGGTAATGTGGACCGTGCGGTCCGCCGTGCCGGTGCCGAGAATTTTTGGCTGGCATTTCCATACCTGCCGCAGGAAACACGAAATTACGTTCCTAACATCCTTGCAACCGTCTTGATCGCCAACAGCCCTAACCAATATGGTTTTGGCCACATACGTCCGGCGCCTTCGCTGACCTATGACAGGATCCGCGTGCCGGCTTCGACAAACCTTAGCCTGTTGGCACAGGCTTCTGATACAAGCGTTCAGTACCTGCGGTACCTCAACCCGCACATGCGGAGCAACTCTACGCCGCCGATGCCCTACGTTGTTAACGTACCCGCCGGCAAGGCAAACGAGGTCGTTGCACTGTTCAGGCGAATTCCCGCTTCCAAGATCAACAACACGAACGTCGCAAATTCGTCCACAGGGGAGACCTGGCAGACGATCTCGAACAGGACCGGTGTAAGTATTAATGAACTACTGGCGGCAAATCCGGGAATGACAACGCCGCGTGGAAAGGTTTTTGTCCCAATGAGCGGCAACAATGTTAACGCCATCGTCTATTCGCGACCGACAAATATTGCCGCCGCCTCGACCGTGTCAAGCAATATTCGCATTGTTAAGGCAAGAGCCGGCGACACGGTCGCCAAACTCGCCCTGCGTGCCAACGCCGATGCTACAGAGGTTGCAAAGTACAACGGCCTACTTCCGAACTCGGTGCTGGGTGCGGGACGCGAGATCAAAATACCGAACAAATAA
PROTEIN sequence
Length: 610
MKFPLHKVSCCIALLFLLFNSIVSAQVTSTTSSNDTRPAEILRAEDAVNKVLLDSGILFREGMLAYEDNHLSDAGEKFNKSVEVFLYSTLNIQREQKLQGCYNQLIETIYRIEFPADNQLPQVRNLTQTCNWNNLDKSLSIDNDLADKITAMAKTSVAKPAAAGTATTVVANGTTAANTVKVGFNTQEFEPSPLDDLSKLELTPDEQQIDSNPVAQQQYQYIQYAVANKSLGFSFQVHPMIQQFINYYRGRGRTTMEVGLYRSGMFMRMARRIFREEGVPENVAWLGQVESAWKPSALSSAAASGLWQFIPGTGSRFGLQRTAYVDERNSFDEATRASARYLKFLANRYHGNWELAMAAYNSGEGNVDRAVRRAGAENFWLAFPYLPQETRNYVPNILATVLIANSPNQYGFGHIRPAPSLTYDRIRVPASTNLSLLAQASDTSVQYLRYLNPHMRSNSTPPMPYVVNVPAGKANEVVALFRRIPASKINNTNVANSSTGETWQTISNRTGVSINELLAANPGMTTPRGKVFVPMSGNNVNAIVYSRPTNIAAASTVSSNIRIVKARAGDTVAKLALRANADATEVAKYNGLLPNSVLGAGREIKIPNK*