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PLM2_5_b1_sep16_scaffold_2279_2

Organism: PLM2_5_b1_sep16_Acidothermus_cellulolyticus_74_11

near complete RP 45 / 55 MC: 1 BSCG 46 / 51 MC: 2 ASCG 13 / 38
Location: comp(219..716)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily Tax=Intrasporangium calvum (strain ATCC 23552 / DSM 43043 / JCM 3097 / NBRC 12989 / 7 KIP) RepID=E6S7D0_INTC7 similarity UNIREF
DB: UNIREF100
  • Identity: 68.3
  • Coverage: 161.0
  • Bit_score: 215
  • Evalue 2.40e-53
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 68.3
  • Coverage: 161.0
  • Bit_score: 215
  • Evalue 6.90e-54
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ADU50093.1}; species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium.;" source="Intrasporangium calvum (strain ATCC 23552 / DSM 43043 / JCM 3097 /; NBRC 12989 / 7 KIP).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 68.3
  • Coverage: 161.0
  • Bit_score: 215
  • Evalue 3.40e-53

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Taxonomy

Intrasporangium calvum → Intrasporangium → Micrococcales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 498
ATGGCCGACCGCAGCGGCTTCGACGAGTTCGTCGCCACCCGGTCGCCGGCGCTGCTGCGCACGGCGTACCTGCTGACCGGCGACCACGGGCTGGCCGAGGACCTGCTGCAGACCGCGCTGGCGAAGTGCTGGTTCGCCTGGGGCCGGATCGACGGGCCGCCGGAGCCGTACGTGCGGCGCGCGCTGGCGACCACGTACGCGACCTGGTGGCGGCGGCGGTGGCGGGGCGAACGGCCCACCGGCGAGCTGCCCGACCGCGGCGACCCGGCCGCGACGACCTCCGTCGACGACCGGGACGCGCTGTGGCGGGCGCTCGGTGCGTTGCCGCGCCGGCAGCGGGCGGTCGTCGTGCTGCGCTACTACGAGGACCTCTCCGAGGCCGAGACCGCGGCCGCGCTAGGGATCAGCACCGGCACAGTGAAGAGCCAGGCGGCCAAGGCGCTGGCGGCGCTGCGCCGGGACGCCGACCTCGCCGGCACGATCGGAGGTGGACTGTGA
PROTEIN sequence
Length: 166
MADRSGFDEFVATRSPALLRTAYLLTGDHGLAEDLLQTALAKCWFAWGRIDGPPEPYVRRALATTYATWWRRRWRGERPTGELPDRGDPAATTSVDDRDALWRALGALPRRQRAVVVLRYYEDLSEAETAAALGISTGTVKSQAAKALAALRRDADLAGTIGGGL*