ggKbase home page

PLM2_5_b1_sep16_scaffold_7664_1

Organism: PLM2_5_b1_sep16_Acidothermus_cellulolyticus_74_11

near complete RP 45 / 55 MC: 1 BSCG 46 / 51 MC: 2 ASCG 13 / 38
Location: 1..648

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma 28 subunit, Sig B/F/G subfamily Tax=Frankia sp. CN3 RepID=G6HM87_9ACTO similarity UNIREF
DB: UNIREF100
  • Identity: 55.8
  • Coverage: 215.0
  • Bit_score: 231
  • Evalue 4.30e-58
sigH; RNA polymerase sigma factor rpoD similarity KEGG
DB: KEGG
  • Identity: 55.1
  • Coverage: 214.0
  • Bit_score: 231
  • Evalue 1.20e-58
RNA polymerase sigma factor rpoD {ECO:0000313|EMBL:AEV86212.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes sp. (strain ATCC 31044 / CBS 674.73 / SE50/110).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 55.1
  • Coverage: 214.0
  • Bit_score: 231
  • Evalue 6.00e-58

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Actinoplanes sp. SE50/110 → Actinoplanes → Micromonosporales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 648
CACATCCCGCTGGCCATCTACTTCGCCCGCCGCTACGCCGGGCGCGGCGAGCCGTTCGACGACCTGGTCCAGGCTGCGGCAGTCGGCCTGGTCAAGGCAGTCGATCGGTTCGATCCCGACCGCGGGACCGCGTTCAGCACCTTCGCCGCGCCGACCATCCTCGGAGAGATCCGCAGGCACTTCCGCGACCGCACCTGGGCCGTGCACGTGCACCGGTCGCTGCAGGTGCGCACCGGCGAGGTCGACCGCTGCGTGCGCGAGCTGAGCCAGGAGCTCCGCCGGTCACCGACGGTCGCCGAGGTTGCCGCGCGGGCGCACCTGTCGCAGGAGCAGGTACTCGACTCGCTGACCTGCAGCGCGGCTTATCGGGCCACCTCCCTGGCCACGCCGATGGGAGACCACGGGACGCTGGGTGACCGGCTCGGGAGCGAGGACCCGGCGTACGAGCAGGTGGACACGCACGAGACGCTCGGGGCTGCGGTGGCCCGCCTGCCGGAACGGGAACGGCGGATCCTGCAGCTGCGCTTCTTCGGCGACATGACCCAGGCGCAGATAGCCGAGCGCCTCGGGCTCTCCCAGATGCATGTATCCCGGCTGCTCAGCCGGACGCTGAGCCAGCTGCGGGAGCAGCTGGTGGGCGTGGTGTAG
PROTEIN sequence
Length: 216
HIPLAIYFARRYAGRGEPFDDLVQAAAVGLVKAVDRFDPDRGTAFSTFAAPTILGEIRRHFRDRTWAVHVHRSLQVRTGEVDRCVRELSQELRRSPTVAEVAARAHLSQEQVLDSLTCSAAYRATSLATPMGDHGTLGDRLGSEDPAYEQVDTHETLGAAVARLPERERRILQLRFFGDMTQAQIAERLGLSQMHVSRLLSRTLSQLREQLVGVV*