ggKbase home page

PLM2_5_b1_sep16_scaffold_18843_4

Organism: PLM2_5_b1_sep16_Acidothermus_cellulolyticus_74_11

near complete RP 45 / 55 MC: 1 BSCG 46 / 51 MC: 2 ASCG 13 / 38
Location: 5146..5481

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily Tax=Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 / NBRC 15066 / NRRL 15764) RepID=K0KG53_SACES similarity UNIREF
DB: UNIREF100
  • Identity: 76.8
  • Coverage: 112.0
  • Bit_score: 171
  • Evalue 2.70e-40
RNA polymerase, sigma-24 subunit, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 76.8
  • Coverage: 112.0
  • Bit_score: 171
  • Evalue 7.70e-41
RNA polymerase sigma factor SigM {ECO:0000313|EMBL:KJK47269.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Lechevalieria.;" source="Lechevalieria aerocolonigenes (Nocardia aerocolonigenes); (Saccharothrix aerocolonigenes).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 76.8
  • Coverage: 112.0
  • Bit_score: 171
  • Evalue 3.80e-40

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Lechevalieria aerocolonigenes → Lechevalieria → Pseudonocardiales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 336
GTGACGGCCGCGGAGCGCTCCGACGCGGACCTGTTACGGGCCCACGCCGCCGGCGACGTCGCCGCCTTCGAGGAGCTGGTCCGCCGGCACCGGGACCGGTTGTGGGCGGTCGCGCTGCGCACCACCCGGGACCGGGAGGAGGCCGCCGACGCGCTGCAGGACGCGCTGATCTCGGCGTACAAGGCGGCCGGGTCGTTCCGCGGCGACTCGGCGGTGACCACCTGGCTGCACCGGATCGTGGTCAACGCCTGCCTGGACCGGATGCGCCGTCGGCAGACCCGGGCGACCGTGCAGCTGCCCGAGGAAGGGCCGCACGAGCCGGCCGACAGCCGGGAC
PROTEIN sequence
Length: 112
VTAAERSDADLLRAHAAGDVAAFEELVRRHRDRLWAVALRTTRDREEAADALQDALISAYKAAGSFRGDSAVTTWLHRIVVNACLDRMRRRQTRATVQLPEEGPHEPADSRD