ggKbase home page

PLM2_5_b1_sep16_scaffold_18418_1

Organism: PLM2_5_b1_sep16_Acidothermus_cellulolyticus_74_11

near complete RP 45 / 55 MC: 1 BSCG 46 / 51 MC: 2 ASCG 13 / 38
Location: 724..1299

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor Tax=Amycolatopsis mediterranei RepID=D8I877_AMYMU similarity UNIREF
DB: UNIREF100
  • Identity: 57.6
  • Coverage: 170.0
  • Bit_score: 197
  • Evalue 1.00e-47
RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 57.6
  • Coverage: 170.0
  • Bit_score: 197
  • Evalue 2.90e-48
RNA polymerase sigma factor {ECO:0000313|EMBL:AEK39874.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis mediterranei (strain S699) (Nocardia mediterranei).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 57.6
  • Coverage: 170.0
  • Bit_score: 197
  • Evalue 1.50e-47

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Amycolatopsis mediterranei → Amycolatopsis → Pseudonocardiales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 576
ATGACCGAGACGTTCAGTGCGACCGCGACCCTGCTCGCCCGGGCGGCGCAGGGAGATCAGCGTGCCTGGAACGAGCTGGTCGACGAGCACAGCCGGCTGCTCTGGTCCGTCGCCCGCTCCTTCCGGCTCGACGCCGCGGACGCCAACGACGTCGTGCAGACGACGTGGCTGCGCCTTCTCGAACACCTCGACCGGATCGAGGACCCGTCGCGGCTGATCGGCTGGCTGGTCACCACCGCGCGCCGGGAGGCGATGCGGGTGCTGCGCCGGTCCGGCCGGGAGCGGCCCGTCTTCGAAGACACCGTGCTCGACCGTCCCGACGACGCACCGCCGGTGGACTCCGCGCTGCTGCAGGACGAGCGCAACCGCGCGCTGTGGGAGGCGTTCGCCCGGCTGAACGAGAAATGCCGTCGGTTGCTGCGGGTCGCCGTCACCCACCCCCAGGCGTACGACGAGATCTCCGAGGCGCTCGGCATGCCTATCGGCAGCATCGGTCCCACCCGGCGGCGCTGCCTCACCCAGCTGCGCGAGCTGCTGGAGGGCACCGTGGTGGTGGAGGGGGACGGGCCGCGATGA
PROTEIN sequence
Length: 192
MTETFSATATLLARAAQGDQRAWNELVDEHSRLLWSVARSFRLDAADANDVVQTTWLRLLEHLDRIEDPSRLIGWLVTTARREAMRVLRRSGRERPVFEDTVLDRPDDAPPVDSALLQDERNRALWEAFARLNEKCRRLLRVAVTHPQAYDEISEALGMPIGSIGPTRRRCLTQLRELLEGTVVVEGDGPR*