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PLM2_5_b1_sep16_scaffold_44321_1

Organism: PLM2_5_b1_sep16_Acidothermus_cellulolyticus_74_11

near complete RP 45 / 55 MC: 1 BSCG 46 / 51 MC: 2 ASCG 13 / 38
Location: comp(33..701)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma-70 factor, sigma-E family Tax=Saccharomonospora marina XMU15 RepID=H5X179_9PSEU similarity UNIREF
DB: UNIREF100
  • Identity: 36.7
  • Coverage: 196.0
  • Bit_score: 99
  • Evalue 4.50e-18
RNA polymerase ECF sigma factor {ECO:0000313|EMBL:EME59975.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis decaplanina DSM 44594.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 40.7
  • Coverage: 135.0
  • Bit_score: 95
  • Evalue 5.30e-17
RNA polymerase ECF sigma factor similarity KEGG
DB: KEGG
  • Identity: 36.4
  • Coverage: 173.0
  • Bit_score: 94
  • Evalue 4.10e-17

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Taxonomy

Amycolatopsis decaplanina → Amycolatopsis → Pseudonocardiales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 669
ATGACCGCCATGCTGCAGACCCGCCCCGACGCCTGGGCCGGGGTGCTCGGCACGCACCGGGGTGAGCTGGTCCGCACGGCCCGGTCGCGGCTCGGCGCCGGGGGCGCCGACGCCGAGGACGTCGTCCACGACGTGGTCGTCCGGGTGCTGCGCGGCGGCAAGGACGTGGACGAGATGGCGACGCCGGGTGCCTACCTGCGGCGGGCGGTCGGGAACGAGTGCGTGAGCCGCTGGCGGCGTACGGCTCGGGAGGTCGTGGTGGCGGAGCTTCCCGACCAGCCGCGGCCGGGGCCGGAGGAGGCCGTGTTGGACCGGCTCGCGCTCGCCGACGCGGTGCGGGCGCTGACCCCCCGCCAGCGGCGGGTGATCGCGCTGACCGTGCTCGACGACCGGCCCGACGACGAGGTGGCCGACCAGCTCGGGATCAGCGAGGTGACCGTTCGGACCACCCGGAGCCGGGCGCTGGCCCGGCTGCGGGAGCGGCTGACCGCGATGGAGACCGAGGATCAGCGGCCGAGCACGCGGTCCGGGGTCACCCGGATCACGGCGCGAACGGTGCCCTCGGGCTCGGCCGGGTACCTGTCGCCGGTGTACTTGACCGACAGCTCGTCGATCAGCTCACGCCCGCCCTCCTCCGACACGGTCACCTCGCCGCGGATCTCCGCGTAG
PROTEIN sequence
Length: 223
MTAMLQTRPDAWAGVLGTHRGELVRTARSRLGAGGADAEDVVHDVVVRVLRGGKDVDEMATPGAYLRRAVGNECVSRWRRTAREVVVAELPDQPRPGPEEAVLDRLALADAVRALTPRQRRVIALTVLDDRPDDEVADQLGISEVTVRTTRSRALARLRERLTAMETEDQRPSTRSGVTRITARTVPSGSAGYLSPVYLTDSSSISSRPPSSDTVTSPRISA*