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PLM2_5_b1_sep16_scaffold_62142_3

Organism: PLM2_5_b1_sep16_Acidothermus_cellulolyticus_74_11

near complete RP 45 / 55 MC: 1 BSCG 46 / 51 MC: 2 ASCG 13 / 38
Location: 1989..2966

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily Tax=Frankia sp. CN3 RepID=G6H7U6_9ACTO similarity UNIREF
DB: UNIREF100
  • Identity: 52.4
  • Coverage: 334.0
  • Bit_score: 329
  • Evalue 2.30e-87
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 54.2
  • Coverage: 330.0
  • Bit_score: 328
  • Evalue 1.90e-87
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ADP81357.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EuI1c).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 54.2
  • Coverage: 330.0
  • Bit_score: 328
  • Evalue 9.30e-87

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Taxonomy

Frankia sp. EuI1c → Frankia → Frankiales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 978
GTGCTCGCGGTGGTAGCAGTCGGCGCCCTGGTCCCGGTGCTGCGCGGACCGAACGGACCGAGCCCGTCGCCCGCCTCCGCGGACGCGCCCGCCGCCGCTGCCGGGCCGGCGACCCCGGAGACCACCCGGTCGGCCGCCGCCGCGATCCCCGGCCTGGACGGGCTGGCGCCGGCGCCGGCCACCAGCGCCCGACCGCGCGCGAGCACAGCCGGTAAGCCCGCCGCGCCCCGGCCAGCGGTCGCGTCGGTCCGCAAGGGCGCGAGCATCTGGAAGTCCGCCGGCATGGCCGCGGCCTTGCGCGACTCCGGGGTTTCCTGGTTCTACACCTGGGGCGCGGACAGCAAGGGCGTCACCGCGCCCGGCGTCGAGTTCGTCCCGATGATCTGGGGCGCGGCCAACGCCGACGCCGCCACGATCGCCCGGGCCAAGGCCGCCGGCCGCACGCTGCTCGGCTTCAACGAGCCCGACCTCGCCGGCCAGGCCACGATGTCGGTGGACACCGCGCTCTCGCTCTGGCCGAAGCTGCAGGCCACCGGGCTGCGGCTGGGCGCGCCCGCGGTCGCCGCCGGCGCCGACAAGGCCGGCGGCTGGCTCGACGAGTTCATGACCGGCGCGGCCGCCCGGGGCTACCGGGTCGACTTCGTCCCGCTGCACTGGTACGGCGGCGACTTCCGGGCCGGGCCGGCGACCGACCAGCTCAAGGCGTACGTGTCCGCGGTCTGGGCGCGCTATCACAAGCCGATCTGGATCACCGAGTACGCGCTGATGCGCTTCGACGGCGGCACCAAGTACCCCACCGCGGCCGTGCAGTCGGCGTTCGTCGGCCAGTCGACGACGATGCTGCGCACCCTCCCGTACGTCGAGCGGTACGCCTGGTTCTCGCTGGCCACCCCGGACGAGGGTGGCGACGGCACCGGCCTCTACCGCCCGGACGGCACCCGCACCCCGGCCGGCGACGCGTACCGGGCGGCGAGCTAG
PROTEIN sequence
Length: 326
VLAVVAVGALVPVLRGPNGPSPSPASADAPAAAAGPATPETTRSAAAAIPGLDGLAPAPATSARPRASTAGKPAAPRPAVASVRKGASIWKSAGMAAALRDSGVSWFYTWGADSKGVTAPGVEFVPMIWGAANADAATIARAKAAGRTLLGFNEPDLAGQATMSVDTALSLWPKLQATGLRLGAPAVAAGADKAGGWLDEFMTGAAARGYRVDFVPLHWYGGDFRAGPATDQLKAYVSAVWARYHKPIWITEYALMRFDGGTKYPTAAVQSAFVGQSTTMLRTLPYVERYAWFSLATPDEGGDGTGLYRPDGTRTPAGDAYRAAS*