ggKbase home page

PLM2_5_b1_sep16_scaffold_242150_3

Organism: PLM2_5_b1_sep16_Alphaproteobacteria_Rhizobiales_62_16

near complete RP 44 / 55 MC: 4 BSCG 42 / 51 MC: 2 ASCG 9 / 38
Location: comp(1147..2814)

Top 3 Functional Annotations

Value Algorithm Source
Exoribonuclease II {ECO:0000256|SAAS:SAAS00089907}; EC=3.1.13.1 {ECO:0000256|SAAS:SAAS00089907};; Flags: Fragment;; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 90.9
  • Coverage: 525.0
  • Bit_score: 937
  • Evalue 5.70e-270
exoribonuclease R (EC:3.1.13.1) similarity KEGG
DB: KEGG
  • Identity: 83.3
  • Coverage: 569.0
  • Bit_score: 924
  • Evalue 7.70e-267
Ribonuclease R Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IXD7_RHOP2 similarity UNIREF
DB: UNIREF100
  • Identity: 83.3
  • Coverage: 569.0
  • Bit_score: 924
  • Evalue 2.70e-266

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Rhodopseudomonas palustris → Rhodopseudomonas → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1668
GGACTGGCCTCCGGCAAGGTGAAAGAGCGGCTCGGCTCGCTCGCGAGCGAGAAGGCTGTCAGCCTGATCGCGATTCATTCCCACGAAATTCCGCAAGCCTTCTCGCCCGCGGCGTTGCGCGAGGCCGAGGAGGCAAAACCTGCGACGCTGAAGGGACGCGAGGACTGGCGCGACCTGCCGCTGGTGACCATCGATCCGCCTGACGCCAAGGACCATGATGACGCGGTGCATGCGCACGCCGATCCCGACCCGAACAATAAAGGCGGCACCATCGTCACCGTCGCGATCGCCGATGTTGCGTTCTATGTGCGGCCGGGCTCAGCGCTCGATCGTGACGCGCTGACGCGCGGCAATTCGGTATACTTTCCGGATCGCGTAGTGCCGATGCTGCCCGAGCGCATCTCCAACGATCTATGCTCGCTGGTGCCGGGCGAGCCGCGCGGCGCGCTGGCGGTGCGGATGGTGATCGGCAACGACGGCCGCAAACGTTCGCACAGCTTTCATCGGATCTTGATGCGTTCGGCCGCCAAGCTGAATTACGCGCAGGCGCAGGCGGCGATCGACGGACGGCCGGATGACACCACGGGCCCCCTGCTCGACCCGATCCTAAGACCGCTTTACGACGCCTATGCGATCGTGAAGCGCGCGCGCGACGAACGCGATCCGCTCGATCTCGACATTCCCGAACGCAAGATCCTGCTGAAATCGGACGGCACCGTGGATCGCGTGATCGTGCCGGAGCGGCTGGACGCGCACAAGCTTATCGAGGAATTCATGATTCTGGCCAACGTCGCCGCGGCCGAAATGCTTGAAAAGAAGGCGCTGCCGCTTATCTACCGGGTGCACGATGAGCCGACGCTTGAGAAGGTTCATAACCTCCAGGAATTCTTGAAAACCCTCGATCTGCCGTTCGCCAAAAGCGGCGCGTTGCGCCCCTCGCTGTTCAATCGCGTGCTGGCGCAGGTCAAGGGCCACGATTCCGAACCGCTGGTGAATGAAGTGGTGTTGCGCTCGCAAGCCCAGGCCGAATACGCCGCCGAGAATTACGGCCACTTCGGCCTCAACCTGCGGCGCTATGCGCATTTCACCTCGCCGATCCGCCGTTACGCCGATCTCGTCGTGCACCGCGCGTTGATCCGTGGCCTCGGGCTTGGCGAAGGCGCGTTGCCGGAGACCGAGACGGTGGAAACGCTGACCGAGGTCGCGGCGCAGATTTCCGTCACCGAGCGCCGCGCCATGAAGGCCGAACGCGAAACCGCCGATCGGCTGATCGCGCATTTTCTCGCCGACCGCATCGGCGCCACCTTTCAGGGCCGCATCTCCGGCGTCACCCGCGCCGGACTGTTCGTCAAGCTCAGCGATACCGGCGCCGACGGCCTGATCCCGATCCGCACCCTGGGCACTGAATATTTCAACTACGACGAGACACGCCACGCGCTGGTCGGCTCGCGCAGCGGTGCCATGCACCGGCTGGGTGACGTCGTCGACGTCCGTCTGGTAGAAGCGGCTCCCGTGGCCGGCGCGTTGCGGTTCGAACTGTTGTCGGAAGGCAGTACCGCGCCGCGCGGACAGCGGCTCCCGTGGCCGGCGCGTTGCGGTTCGAACTGTTGTCGGAAGGCAGTACCGCGCCGCGCGGACGCAAGCGCCCGGGCGCCAACGACACCATGA
PROTEIN sequence
Length: 556
GLASGKVKERLGSLASEKAVSLIAIHSHEIPQAFSPAALREAEEAKPATLKGREDWRDLPLVTIDPPDAKDHDDAVHAHADPDPNNKGGTIVTVAIADVAFYVRPGSALDRDALTRGNSVYFPDRVVPMLPERISNDLCSLVPGEPRGALAVRMVIGNDGRKRSHSFHRILMRSAAKLNYAQAQAAIDGRPDDTTGPLLDPILRPLYDAYAIVKRARDERDPLDLDIPERKILLKSDGTVDRVIVPERLDAHKLIEEFMILANVAAAEMLEKKALPLIYRVHDEPTLEKVHNLQEFLKTLDLPFAKSGALRPSLFNRVLAQVKGHDSEPLVNEVVLRSQAQAEYAAENYGHFGLNLRRYAHFTSPIRRYADLVVHRALIRGLGLGEGALPETETVETLTEVAAQISVTERRAMKAERETADRLIAHFLADRIGATFQGRISGVTRAGLFVKLSDTGADGLIPIRTLGTEYFNYDETRHALVGSRSGAMHRLGDVVDVRLVEAAPVAGALRFELLSEGSTAPRGQRLPWPARCGSNCCRKAVPRRADASARAPTTP*