ggKbase home page

PLM6_200_b1_sep16_Deltaproteobacteria_56_19

PLM3-1_200cm_b1_sep2016_Deltaproteobacteria_56_19
In projects: PLM3-1_200cm_b1_sep2016  |  PLM2016-drep98-anvio  |  PLM2016-NC-80p

Consensus taxonomy: Deltaproteobacteria  →  Proteobacteria  →  Bacteria

Displaying items 551-600 of 608 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
PLM3-1_200_b1_sep16_scaffold_22555
Species: RLO_Deltaproteobacteria_60_19 (50%)
2 2399 bp 55.77 21.07 95.79
PLM3-1_200_b1_sep16_scaffold_16076
Species: RLO_Deltaproteobacteria_60_19 (50%)
2 2862 bp 56.32 11.11 97.07
PLM3-1_200_b1_sep16_scaffold_20018
Species: Rhodocyclaceae bacterium PG1-Ca6 (50%)
2 2550 bp 56.98 14.88 67.29
PLM3-1_200_b1_sep16_scaffold_38556
Species: RLO_Deltaproteobacteria_60_16 (100%)
2 2308 bp 57.80 21.90 82.54
PLM3-1_200_b1_sep16_scaffold_28243
Species: RLO_Deltaproteobacteria_57_22 (100%)
2 2131 bp 55.94 16.19 83.62
PLM3-1_200_b1_sep16_scaffold_64491
Species: RLO_Deltaproteobacteria_60_16 (50%)
2 2562 bp 56.60 18.50 70.73
PLM3-1_200_b1_sep16_scaffold_29902
Species: RLO_Deltaproteobacteria_57_22 (50%)
2 2066 bp 53.48 14.52 88.87
PLM3-1_200_b1_sep16_scaffold_29136
Species: RLO_Deltaproteobacteria_60_19 (50%)
2 2094 bp 58.36 16.05 87.11
PLM3-1_200_b1_sep16_scaffold_22069
Species: GWC2_Deltaproteobacteria_55_46b_curated (50%)
2 3673 bp 53.88 14.13 93.11
PLM3-1_200_b1_sep16_scaffold_22332
Species: RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated (100%)
2 2411 bp 57.32 18.23 87.47
PLM3-1_200_b1_sep16_scaffold_34040
Species: Leptospira fainei (50%)
2 2730 bp 46.59 19.45 82.31
PLM3-1_200_b1_sep16_scaffold_38083
Species: Geobacter pickeringii (50%)
2 2933 bp 55.06 12.07 63.21
PLM3-1_200_b1_sep16_scaffold_50629
Species: RLO_Deltaproteobacteria_60_19 (100%)
2 2708 bp 57.79 22.77 96.38
PLM3-1_200_b1_sep16_scaffold_9269
Species: RLO_Deltaproteobacteria_60_19 (50%)
2 3784 bp 57.72 12.96 99.89
PLM3-1_200_b1_sep16_scaffold_22865
Species: RBG_19FT_COMBO_Nitrospirae_42_15_curated (100%)
2 2382 bp 56.88 11.84 92.95
PLM3-1_200_b1_sep16_scaffold_25606
Species: Nitrospina gracilis (50%)
2 2243 bp 53.95 19.06 75.70
PLM3-1_200_b1_sep16_scaffold_89286
Species: RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated (50%)
2 2197 bp 53.76 15.02 47.66
PLM3-1_200_b1_sep16_scaffold_28573
Species: RLO_Deltaproteobacteria_60_19 (50%)
2 2118 bp 56.33 16.36 91.22
PLM3-1_200_b1_sep16_scaffold_20102
Species: Chroococcales cyanobacterium CENA595 (50%)
2 2544 bp 57.39 17.33 90.09
PLM3-1_200_b1_sep16_scaffold_15769
Species: RLO_Deltaproteobacteria_60_16 (50%)
2 2888 bp 57.34 19.01 78.95
PLM3-1_200_b1_sep16_scaffold_53009
Species: RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated (50%)
2 2195 bp 56.67 16.95 90.62
PLM3-1_200_b1_sep16_scaffold_25636
Species: RLO_Deltaproteobacteria_60_19 (50%)
2 2242 bp 54.59 22.68 89.65
PLM3-1_200_b1_sep16_scaffold_29220
Species: RLO_Deltaproteobacteria_57_22 (50%)
2 2091 bp 58.01 19.08 101.00
PLM3-1_200_b1_sep16_scaffold_29991
Species: RLO_Deltaproteobacteria_60_16 (50%)
2 2063 bp 58.36 8.51 91.76
PLM3-1_200_b1_sep16_scaffold_24976
Species: RLO_Deltaproteobacteria_57_22 (50%)
2 2273 bp 55.87 24.29 97.14
PLM3-1_200_b1_sep16_scaffold_27867
Species: marine sediment metagenome (50%)
2 2146 bp 51.26 30.20 100.09
PLM3-1_200_b1_sep16_scaffold_16700
Species: Gloeocapsa sp. PCC 7428 (50%)
2 2804 bp 57.10 14.60 91.37
PLM3-1_200_b1_sep16_scaffold_12669
Species: Inquilinus limosus (50%)
2 3233 bp 58.43 17.96 94.93
PLM3-1_200_b1_sep16_scaffold_13746
Species: RLO_Deltaproteobacteria_57_22 (50%)
2 3094 bp 57.24 17.94 90.27
PLM3-1_200_b1_sep16_scaffold_26127
Species: RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated (100%)
2 2220 bp 56.67 19.53 88.51
PLM3-1_200_b1_sep16_scaffold_27131
Species: RBG_16_Chloroflexi_68_14_curated (50%)
2 2176 bp 59.47 11.44 96.78
PLM3-1_200_b1_sep16_scaffold_16220
Species: RLO_Deltaproteobacteria_57_22 (50%)
2 2850 bp 55.68 19.32 79.16
PLM3-1_200_b1_sep16_scaffold_49197
Species: GWD2_Deltaproteobacteria_55_8_curated (50%)
2 2599 bp 55.98 15.41 73.07
PLM3-1_200_b1_sep16_scaffold_31070
Species: GWD2_Deltaproteobacteria_55_8_curated (50%)
2 2025 bp 58.02 15.63 77.48
PLM3-1_200_b1_sep16_scaffold_24264
Species: RLO_Deltaproteobacteria_60_19 (50%)
2 2308 bp 57.06 14.69 96.19
PLM3-1_200_b1_sep16_scaffold_29795
Species: R_NC10_66_22 (50%)
2 2070 bp 57.49 13.41 95.65
PLM3-1_200_b1_sep16_scaffold_37229
Species: RLO_Deltaproteobacteria_60_19 (100%)
2 2537 bp 56.29 23.71 95.66
PLM3-1_200_b1_sep16_scaffold_67112
Species: RLO_Deltaproteobacteria_60_19 (100%)
2 2158 bp 54.73 24.05 81.05
PLM3-1_200_b1_sep16_scaffold_27672
Species: RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated (50%)
2 2153 bp 57.50 16.51 92.10
PLM3-1_200_b1_sep16_scaffold_14873
Species: RLO_Deltaproteobacteria_60_19 (100%)
2 2974 bp 57.73 22.19 92.60
PLM3-1_200_b1_sep16_scaffold_35161
Species: RLO_Deltaproteobacteria_60_19 (50%)
2 2265 bp 57.22 24.57 99.47
PLM3-1_200_b1_sep16_scaffold_28155
Species: RBG_16_RIF_WS3X_71_46_curated (50%)
2 2134 bp 57.17 23.62 92.92
PLM3-1_200_b1_sep16_scaffold_25207
Species: Actinotalea ferrariae (50%)
2 3747 bp 57.09 14.85 98.56
PLM3-1_200_b1_sep16_scaffold_19729
Species: RBG_13_WOR_2_41_10_curated (50%)
2 2571 bp 53.17 10.09 99.30
PLM3-1_200_b1_sep16_scaffold_27945
Species: RBG_19FT_COMBO_Nitrospirae_42_15_curated (50%)
2 2142 bp 57.75 15.90 97.48
PLM3-1_200_b1_sep16_scaffold_18403
Species: RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated (50%)
2 2664 bp 56.76 17.23 96.40
PLM3-1_200_b1_sep16_scaffold_25724
Species: GWA2_Rokubacteria_70_23_curated (50%)
2 2237 bp 58.02 17.17 97.76
PLM3-1_200_b1_sep16_scaffold_22750
Species: RLO_Deltaproteobacteria_57_22 (50%)
2 2388 bp 53.31 15.83 85.93
PLM3-1_200_b1_sep16_scaffold_17774
Species: RBG_16_Planctomycetes_43_13_curated (50%)
2 2713 bp 54.77 18.30 68.12
PLM3-1_200_b1_sep16_scaffold_24048
Species: GWA2_Deltaproteobacteria_45_12_curated (50%)
2 2319 bp 51.01 19.79 80.98
Displaying items 551-600 of 608 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.