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PLM3_127_b1_sep16_Deltaproteobacteria_55_8

PLM3_127cm_b1_sep2016_Deltaproteobacteria_55_8
In projects: PLM3_127cm_b1_sep2016  |  PLM2016-drep98-anvio  |  PLM2016-NC-80p

Consensus taxonomy: Deltaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: PLM3_127cm_b1_sep2016_UNK Curated version: PLM3_127_b1_sep16_metabat_bin_19_curated

Properties

Avg. coverage: 8.09 Longest contig: 26.15 Kbp Bin length: 3.32 Mbp GC content: 54.64 %
Contigs count: 764 Features count: 3911 rRNAs count: 0 tRNAs count: 32

Genome completeness

near complete RP 45 / 55 MC: 1 BSCG 46 / 51 MC: 1 ASCG 10 / 38 MC: 1
Displaying items 451-500 of 764 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
PLM3_127_b1_sep16_scaffold_16679
Class: Deltaproteobacteria (80%)
5 3688 bp 54.50 8.62 89.32
PLM3_127_b1_sep16_scaffold_26078
Species: GWD2_Deltaproteobacteria_55_8_curated (50%)
4 2952 bp 54.51 9.76 89.33
PLM3_127_b1_sep16_scaffold_23258
Species: RLO_Deltaproteobacteria_60_19 (66.67%)
3 3388 bp 54.07 10.63 89.43
PLM3_127_b1_sep16_scaffold_43899
Species: RLO_Deltaproteobacteria_57_22 (75%)
4 2576 bp 57.26 8.27 89.44
PLM3_127_b1_sep16_scaffold_3460
Class: Deltaproteobacteria (66.67%)
9 10434 bp 54.69 8.96 89.45
PLM3_127_b1_sep16_scaffold_24292
Class: Deltaproteobacteria (100%)
3 3057 bp 52.80 10.06 89.50
PLM3_127_b1_sep16_scaffold_17845
Class: Deltaproteobacteria (66.67%)
3 3568 bp 56.64 7.02 89.55
PLM3_127_b1_sep16_scaffold_16000
Domain: Bacteria (66.67%)
6 4238 bp 49.10 5.34 89.55
PLM3_127_b1_sep16_scaffold_5723
Phylum: Proteobacteria (66.67%)
6 6055 bp 54.57 6.52 89.58
PLM3_127_b1_sep16_scaffold_36446
Class: Deltaproteobacteria (50%)
4 3570 bp 56.53 6.55 89.58
PLM3_127_b1_sep16_scaffold_10015
Species: RLO_Deltaproteobacteria_57_22 (50%)
4 4684 bp 55.23 7.40 89.60
PLM3_127_b1_sep16_scaffold_14541
Class: Deltaproteobacteria (50%)
4 3934 bp 56.58 7.05 89.60
PLM3_127_b1_sep16_scaffold_32993
Class: Deltaproteobacteria (50%)
4 2618 bp 50.15 8.25 89.61
PLM3_127_b1_sep16_scaffold_22666
Species: RLO_Deltaproteobacteria_60_16 (50%)
4 3167 bp 55.29 6.25 89.61
PLM3_127_b1_sep16_scaffold_77063
Domain: Bacteria (100%)
5 2627 bp 57.82 6.85 89.65
PLM3_127_b1_sep16_scaffold_20937
Species: RLO_Deltaproteobacteria_60_16 (50%)
4 3296 bp 55.40 8.15 89.65
PLM3_127_b1_sep16_scaffold_39093
Species: Syntrophus aciditrophicus (50%)
2 3242 bp 55.52 7.45 89.67
PLM3_127_b1_sep16_scaffold_60379
Species: RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated (66.67%)
6 2586 bp 56.15 5.74 89.68
PLM3_127_b1_sep16_scaffold_23415
Class: Deltaproteobacteria (80%)
5 4084 bp 55.02 10.76 89.69
PLM3_127_b1_sep16_scaffold_69741
Species: GWD2_Deltaproteobacteria_55_8_curated (50%)
4 3415 bp 55.93 7.47 89.69
PLM3_127_b1_sep16_scaffold_56695
Species: RLO_Deltaproteobacteria_60_19 (66.67%)
3 2672 bp 57.82 7.52 89.71
PLM3_127_b1_sep16_scaffold_32856
Species: RLO_Deltaproteobacteria_57_22 (50%)
2 2624 bp 57.51 7.26 89.75
PLM3_127_b1_sep16_scaffold_7475
Class: Deltaproteobacteria (60%)
5 5377 bp 57.23 9.51 89.77
PLM3_127_b1_sep16_scaffold_3254
Class: Deltaproteobacteria (100%)
11 7866 bp 55.30 8.56 89.78
PLM3_127_b1_sep16_scaffold_12468
Species: RLO_Deltaproteobacteria_60_16 (50%)
2 4229 bp 53.89 9.33 89.81
PLM3_127_b1_sep16_scaffold_32599
Species: RLO_Deltaproteobacteria_57_22 (50%)
4 2635 bp 51.80 8.08 89.83
PLM3_127_b1_sep16_scaffold_8766
Phylum: Proteobacteria (55.56%)
9 5676 bp 51.48 6.47 89.85
PLM3_127_b1_sep16_scaffold_108122
Phylum: Proteobacteria (66.67%)
3 2574 bp 54.04 4.25 89.86
PLM3_127_b1_sep16_scaffold_34781
Domain: Bacteria (75%)
4 2547 bp 54.46 8.07 89.87
PLM3_127_b1_sep16_scaffold_5725
Class: Deltaproteobacteria (57.14%)
7 7246 bp 51.64 7.74 89.88
PLM3_127_b1_sep16_scaffold_5342
Class: Deltaproteobacteria (60%)
5 7619 bp 52.99 6.32 89.89
PLM3_127_b1_sep16_scaffold_5322
Class: Deltaproteobacteria (100%)
8 6254 bp 55.10 8.06 89.89
PLM3_127_b1_sep16_scaffold_66263
Class: Deltaproteobacteria (50%)
4 2884 bp 55.20 11.70 89.91
PLM3_127_b1_sep16_scaffold_33942
Class: Deltaproteobacteria (100%)
3 2579 bp 55.99 6.86 89.92
PLM3_127_b1_sep16_scaffold_6676
Species: RLO_Deltaproteobacteria_60_16 (60%)
10 5659 bp 54.96 9.57 89.95
PLM3_127_b1_sep16_scaffold_102203
Class: Deltaproteobacteria (60%)
5 2584 bp 55.22 4.24 89.98
PLM3_127_b1_sep16_scaffold_4565
Species: RLO_Deltaproteobacteria_60_19 (62.5%)
8 6708 bp 56.32 9.79 89.98
PLM3_127_b1_sep16_scaffold_35825
Phylum: Proteobacteria (66.67%)
3 2507 bp 57.52 6.70 89.99
PLM3_127_b1_sep16_scaffold_25707
Species: GWD2_Deltaproteobacteria_55_8_curated (75%)
4 2973 bp 52.24 10.04 90.01
PLM3_127_b1_sep16_scaffold_47714
Class: Deltaproteobacteria (75%)
4 3342 bp 55.39 8.53 90.04
PLM3_127_b1_sep16_scaffold_8999
Class: Deltaproteobacteria (100%)
9 4918 bp 55.37 8.54 90.04
PLM3_127_b1_sep16_scaffold_35332
Species: RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated (50%)
4 2922 bp 54.04 8.57 90.04
PLM3_127_b1_sep16_scaffold_4552
Class: Deltaproteobacteria (77.78%)
9 7323 bp 54.38 8.30 90.05
PLM3_127_b1_sep16_scaffold_17967
Class: Deltaproteobacteria (50%)
6 4477 bp 55.89 9.28 90.06
PLM3_127_b1_sep16_scaffold_2969
Domain: Bacteria (80%)
10 8217 bp 52.06 9.47 90.22
PLM3_127_b1_sep16_scaffold_1525
Class: Deltaproteobacteria (90.91%)
11 11315 bp 56.45 9.12 90.23
PLM3_127_b1_sep16_scaffold_25961
Species: RLO_Deltaproteobacteria_60_19 (100%)
2 2959 bp 56.20 7.20 90.23
PLM3_127_b1_sep16_scaffold_8849
Species: RLO_Deltaproteobacteria_57_22 (57.14%)
7 4960 bp 52.30 6.96 90.24
PLM3_127_b1_sep16_scaffold_24917
Species: RLO_PLX_64_10 (50%)
4 3021 bp 54.42 7.60 90.27
PLM3_127_b1_sep16_scaffold_10749
Species: RLO_Deltaproteobacteria_57_22 (50%)
6 4533 bp 56.92 8.24 90.27
Displaying items 451-500 of 764 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.