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PLM3_127_b2_sep16_scaffold_415

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Displaying items 61-89 of 89 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_415_58
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(51442..52584)
-----------------
DNA (1143bp)
protein (381aa)
Lipid-A-disaccharide synthase bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
lpxB; lipid-A-disaccharide synthase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_415_59
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(52566..53393)
-----------------
DNA (828bp)
protein (276aa)
Putative uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_415_60
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(53372..54400)
-----------------
DNA (1029bp)
protein (343aa)
Oxidoreductase domain protein bin=GWA2_Methylomirabilis_73_35 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
oxidoreductase
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_415_61
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(54400..55239)
-----------------
DNA (840bp)
protein (280aa)
acyl-ACP-UDP-N-acetylglucosamine O-acyltransferase; K00677 UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Omnitrophica tax=bin7_NC10_sister organism_group=NC10
acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase (EC:2.3.1.129)
Tax=CSP1_6_Rokubacteria
PLM3_127_b2_sep16_scaffold_415_62
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(55240..55794)
-----------------
DNA (555bp)
protein (185aa)
Putative Outer membrane chaperone Skp (OmpH) bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Outer membrane chaperone Skp (OmpH)
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_415_63
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(55826..58090)
-----------------
DNA (2265bp)
protein (755aa)
Surface antigen (D15) bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
outer membrane protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_415_64
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(58113..58754)
-----------------
DNA (642bp)
protein (214aa)
ATPase AAA; K03696 ATP-dependent Clp protease ATP-binding subunit ClpC bin=bin7_NC10_sister species=Thermosediminibacter oceani genus=Thermosediminibacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
clpC; negative regulator of genetic competence ClpC/MecB
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_415_65
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

59101..59523
-----------------
DNA (423bp)
protein (141aa)
Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
PLM3_127_b2_sep16_scaffold_415_66
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

59922..60659
-----------------
DNA (738bp)
protein (246aa)
Putative uncharacterized protein bin=GWC2_Methylomirabilis_70_24 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
PLM3_127_b2_sep16_scaffold_415_67
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(60722..61459)
-----------------
DNA (738bp)
protein (246aa)
ABC transporter; K09810 lipoprotein-releasing system ATP-binding protein [EC:3.6.3.-] bin=bin7_NC10_sister species=Geobacter daltonii genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
ABC transporter-like protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_415_68
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(61452..62687)
-----------------
DNA (1236bp)
protein (412aa)
lolC; Lipoprotein releasing system, transmembrane protein, LolC/E family bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
lolC; Lipoprotein releasing system, transmembrane protein, LolC/E family
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_415_69
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(62684..64198)
-----------------
DNA (1515bp)
protein (505aa)
lysyl-tRNA synthetase (EC:6.1.1.6)
Lysine--tRNA ligase bin=GWC2_Methylomirabilis_70_16 species=Carboxydothermus hydrogenoformans genus=Carboxydothermus taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_415_70
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(64195..65181)
-----------------
DNA (987bp)
protein (329aa)
Peptide chain release factor 2 bin=GWA2_Methylomirabilis_73_35 species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_415_71
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(65296..66663)
-----------------
DNA (1368bp)
protein (456aa)
lnt; Apolipoprotein N-acyltransferase (ALP N-acyltransferase) (EC:2.3.1.-)
Apolipoprotein N-acyltransferase bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_415_72
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(66669..67394)
-----------------
DNA (726bp)
protein (242aa)
Metallophosphoesterase bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
phosphatase family protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_415_73
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(67405..67839)
-----------------
DNA (435bp)
protein (145aa)
N utilization substance protein B homolog bin=GWA2_Methylomirabilis_73_35 species=Chthoniobacter flavus genus=Chthoniobacter taxon_order=unknown taxon_class=Spartobacteria phylum=Verrucomicrobia tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
NusB antitermination factor
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_415_74
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(67808..68071)
-----------------
DNA (264bp)
protein (88aa)
riboflavin synthase (EC:2.5.1.9)
6,7-dimethyl-8-ribityllumazine synthase bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_415_75
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(68406..69617)
-----------------
DNA (1212bp)
protein (404aa)
riboflavin biosynthesis GTP cyclohydrolase II RibA (EC:3.5.4.25)
Riboflavin biosynthesis protein RibA bin=GWC2_Methylomirabilis_70_16 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_415_76
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(69614..70216)
-----------------
DNA (603bp)
protein (201aa)
riboflavin synthase alpha chain (EC:2.5.1.9)
Riboflavin synthase alpha chain (Fragment) bin=GWA2_Methylomirabilis_73_35 species=Heliobacillus mobilis genus=Heliobacillus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_415_77
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(70216..71328)
-----------------
DNA (1113bp)
protein (371aa)
diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC:1.1.1.193 3.5.4.26)
Riboflavin biosynthesis protein RibD bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_415_78
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(71328..72254)
-----------------
DNA (927bp)
protein (309aa)
Signal recognition particle receptor FtsY bin=GWA2_Methylomirabilis_73_35 species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ftsY; signal recognition particle-docking protein ftsy
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_415_79
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(72251..73120)
-----------------
DNA (870bp)
protein (290aa)
Transcriptional regulator, XRE family bin=GWF2_Methylomirabilis_70_14 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_415_80
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(73192..76773)
-----------------
DNA (3582bp)
protein (1194aa)
Chromosome partition protein Smc bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
condensin subunit Smc
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_415_81
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(76869..79667)
-----------------
DNA (2799bp)
protein (933aa)
secA; preprotein translocase subunit SecA; K03070 preprotein translocase subunit SecA bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
secA; preprotein translocase subunit SecA
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_415_82
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(79715..81385)
-----------------
DNA (1671bp)
protein (557aa)
DNA repair and genetic recombination protein bin=GWA2_Methylomirabilis_73_35 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
recN; DNA repair ATPase RecN
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_415_83
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(81448..82305)
-----------------
DNA (858bp)
protein (286aa)
inorganic polyphosphate/ATP-NAD kinase (Poly(P)/ATP NAD kinase)(ppnK) (EC:2.7.1.23)
Probable inorganic polyphosphate/ATP-NAD kinase bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_415_84
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(82302..83093)
-----------------
DNA (792bp)
protein (264aa)
rRNA methylase; K06442 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] bin=bin7_NC10_sister species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
rRNA methyltransferase
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_415_85
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(83102..83806)
-----------------
DNA (705bp)
protein (235aa)
peptidase, S54 (Rhomboid) family bin=bin7_NC10_sister species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=bin7_NC10_sister organism_group=NC10
rhomboid family protein
Tax=CSP1_6_Rokubacteria
PLM3_127_b2_sep16_scaffold_415_86
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

84102..84584
-----------------
DNA (483bp)
protein (161aa)
Putative uncharacterized protein bin=GWC2_Methylomirabilis_70_24 species=Magnaporthe poae genus=Magnaporthe taxon_order=Magnaporthales taxon_class=Sordariomycetes phylum=Ascomycota tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Displaying items 61-89 of 89 in total

View Taxonomy