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PLM3_127_b2_sep16_scaffold_1363_21

Organism: PLM3_127_b2_sep16_Betaproteobacteria_Methylophilales_62_20

near complete RP 52 / 55 MC: 4 BSCG 51 / 51 MC: 1 ASCG 14 / 38 MC: 2
Location: 22986..26402

Top 3 Functional Annotations

Value Algorithm Source
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 69.8
  • Coverage: 1141.0
  • Bit_score: 1582
  • Evalue 0.0
Transcription-repair-coupling factor Tax=Sulfuricella denitrificans skB26 RepID=S6B477_9PROT similarity UNIREF
DB: UNIREF100
  • Identity: 69.8
  • Coverage: 1141.0
  • Bit_score: 1582
  • Evalue 0.0
mfd; transcription-repair coupling factor similarity KEGG
DB: KEGG
  • Identity: 69.8
  • Coverage: 1141.0
  • Bit_score: 1582
  • Evalue 0.0

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Taxonomy

Sulfuricella denitrificans → Sulfuricella → Sulfuricellales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 3417
ATGCTTCTGCCTCCGCTGACCCCGACCCCGGGGTCGCGTGCTACCTTTCCCCCGCTGCACGGATCCGCAGACGCGCTGGCGCTCGCTGAACTGGCACGCAGCGCGCGTCCGCTGGCAATCATTACCGAGACCCCGCGGGATGCAGAGCGGCTGCGCGAGGAGATCGCCTTTTTTGACCCGACGCTGCGTGTATTCCTGCTCCCGGATTGGGAAACGCTCCCCTACGACAGCTTCTCGCCGCACCAGGACCTGATTTCCGAGCGCCTGGCCACGCTCTACCAGATTACCCACGATGCCTTCGACGTCGCCGTGGTGCCGATCACCACCGCCCTGTACCGCCTGCCACCGGCATCCTTTCTCGCGGCCTACACGTTTTTCCTCAAGCAGGGCGAAAAACTCGATGCGAACTCGCTGCGCAGGCAGTTGACGCTGGCCGGCTACTCGCACGTCACCCAAGTGGTCTCTCCCGGAGAGTTCAGCTTTCGCGGCGGCGTCATCGATCTGTTCCCGATGGGCAGCGCGCTGCCCTATCGCATCGACCTGTTCGACGACGAGATCGAGAGCATCCGCTCCTTCGACGTGGATACCCAGCGCAGCATCTACAAGGTCAAGGAGGTGCGACTGCTGCCGGCGCGCGAGTTTCCCACCGACGACAACGCCCGCACCACTTTTCGCCAGCGTTTCCGGGAAAAATTCGAAGGCGATCCTTCCAAGAGCCGCCTGTACAAGGACTTGAGCCAGGGCTTCATCCCCGCTGGAATGGAGTACTACCTGCCGTTGTTCTTCGAGTCCACTGCGACGCTCGCTGATTACCTTCCCGCCGGAACGCTGGTGTCCTTGCATCAGAACGTGGCAAAGGCGATACGCCAGTTCTGGCAGGACACACAGTCGCGGTACAACCTGCTGCGCGGCGACCCCGATCGCCCGCTGCTGCCGCCAGCCGAGTTGTTTCTGCGCGAGGACGAGCTTTTCGGCGGCCTCAAGCCGTTTGCGCGGATCGAGATCGATGCGGCCGGGAATGACGGGAGTGTCAGGGCCTCGTTCCCGACCGAGCCGCCGCCGTCGGTGGCGGTCGATCGCCGCGCCGACAATCCGCTCGCCGACTTGTCCGCGTTTCACAGCAACTACGGCGGCCGTGTCCTGCTGATCGCCGAAAGCATGGGACGGCGGGAGACGCTGCTCGGGCTTCTCAACGAGTACCAGTTGCGGCCGAAAGTCTGCCACGGCTGGAAGGCCTTCAAGGATGCGGCGGAGCGGTTGATGCTGACCGTAGGCCCGCTGCATGCCGGCTTCATCGATGCCGGTGACGCCGTCGCGCTGATTACCGAGAACGAACTCTACCCGTCACAGGTTCGCACGCGGGTTTCGCGGGAGCGCCGCGTCGCCACCGAGGGCATGCTGCGTGACCTGTCGGAAGTCAAGGTCGGCGATGCCGTGGTACACGCCCAACACGGCATCGGCCGCTATCTCGGGCTCGCCAACATGGACCTGGGCGACGGCGAGACCGAGTTCCTGACGCTCGAGTACGACGGCGGCGACAAGCTCTACGTGCCGGTATCGCAGCTTGCGGTGATCAGCCGTTACAGCGGCGCGGCGCCCGAAGCCGTACCGCTGCACAAGCTCGGCAGCGGCCAGTGGGAAAAAGCCCGGCGGCGCGCCGCCGCGCAGGTGCGCGATACCGCGGCGGAACTGCTGAACCTCTACGCCCAGCGCGCCGCGCGCCAGGGCTACGCCTTCCAGATCAACACCCACGACTACGAGGCGTTCCGGGCAGGCTTTCCGTTCGAGGAAACACCTGATCAGGCGGCGGCCATCCAGGCCGTGATCGGCGACATGCAGGACGGCAAGCCGATGGACCGCCTGGTGTGCGGCGATGTGGGCTTCGGCAAAACCGAAGTCGCGCTTCGTGCCGCTTTCGTCGCCGTCGCGGACGGCAAACAGGTGGCCGTTCTGGTGCCCACCACGCTGCTCGCCGAACAACACTTCCAGACCTTCTCCGACCGCTTTGCCGATTGGCCGGTAAAGATTGCCGAGCTGTCGCGTTTTCGTTCGGCAAAGGAAACCGGCGCCGCACTCGAAGGGCTGGAGCAAGGCCGCAAGGACATCGCCATCGGCACCCACAAGCTGCTTTCCCGCGGCGTGCAATTCAAGGACCTTGGTCTGGTGATCATAGACGAGGAGCACCGCTTCGGCGTGCGTCAGAAGGAAAAACTGAAGGCGTTGCGCGCCCAGGTGGACGTGTTAACGCTTACCGCCACGCCGATTCCGCGCACGCTGGCAATGGCGCTCGAAGGACTGCGCGATTTCTCGGTCATCGCCACCGCTCCGCAGCGGCGCCTGGCGATCAAGACCTTCGTATCACCTCTGAGCGAGGGCCTGATCCGCGAAGCGGTGCTGCGTGAACTGAAGCGCGGCGGGCAGGTTTACTTCCTGCACAACGAGATCGAGAGCATCCGCAACATGGAGGCGCGGCTGGCGAAGTTGCTGCCGGAAGCGCGCATCCGCACCGCCCACGGGCAGATGCCTGAGCGTGAATTGGAACTGGTCATGCGCGACTTCTACCAGGTCCGCTTCAACCTGCTGCTTTGCACGACCATCATCGAGACCGGCATCGACGTGCCGACCGCCAACACCATCATCATCAATCGCGCCGACAAGTTCGGCCTTGCGCAGCTGCACCAGTTGCGCGGCCGCGTCGGCCGCTCGCACCACCAGGCCTACGCCTATCTGCTGACGCCGGACGAGGATGCTGTCGGCAGCCAGGCGAGAAAACGCCTGGAGGCGATCCAGATGATGGAAGAACTGGGCTCGGGCTTCTATCTCGCCATGCAAGACCTCGAAATCCGCGGAGCCGGCGAAGTACTGGGTGAATCGCAGAGCGGGGAAATGCAGGAAGTGGGGTTCGCGCTCTATGCCGAGATGCTCAACGCGGCCGTGAAGTCGCTCAAGGCCGGCAAGGAGCCGGGACTTGCTGGCGGCTTGAACCTCGGCACCGAGATCAACCTGCACGCCCCGGCGCTGCTTCCCGAGGACTACTGCGCCGACATCCACGAGCGACTGGTGCTGTACAAGCGGCTCGCCAACTGCGAGACGGCGGAAGAACTGGAAGCCCTGCACGAGGAACTGGTGGACCGCTTCGGCTTACTGCCCGACCCTGCCAATGTCCTGCTGGATAGTCACCGGCTGCGCATCGCCGCCAAGCAGCTTGGCATCTCCCGTATCGATGCCGGCCCGGAGAGCCTTGTTCTGCAGTTCGTACCCAATCCCCCGCTAGACCCCGCCAAGATCATAGGACTGGTACAGAGCCGCAAGAACTTCAAGTTGAGCGGGCAGGATCGGCTTCGAGTGGACGCCGCGATGCCGGACGTTGCTGCCCGCGTCACGCAGGCACGCGCTGTCCTGAAAGAGCTTGGCTGA
PROTEIN sequence
Length: 1139
MLLPPLTPTPGSRATFPPLHGSADALALAELARSARPLAIITETPRDAERLREEIAFFDPTLRVFLLPDWETLPYDSFSPHQDLISERLATLYQITHDAFDVAVVPITTALYRLPPASFLAAYTFFLKQGEKLDANSLRRQLTLAGYSHVTQVVSPGEFSFRGGVIDLFPMGSALPYRIDLFDDEIESIRSFDVDTQRSIYKVKEVRLLPAREFPTDDNARTTFRQRFREKFEGDPSKSRLYKDLSQGFIPAGMEYYLPLFFESTATLADYLPAGTLVSLHQNVAKAIRQFWQDTQSRYNLLRGDPDRPLLPPAELFLREDELFGGLKPFARIEIDAAGNDGSVRASFPTEPPPSVAVDRRADNPLADLSAFHSNYGGRVLLIAESMGRRETLLGLLNEYQLRPKVCHGWKAFKDAAERLMLTVGPLHAGFIDAGDAVALITENELYPSQVRTRVSRERRVATEGMLRDLSEVKVGDAVVHAQHGIGRYLGLANMDLGDGETEFLTLEYDGGDKLYVPVSQLAVISRYSGAAPEAVPLHKLGSGQWEKARRRAAAQVRDTAAELLNLYAQRAARQGYAFQINTHDYEAFRAGFPFEETPDQAAAIQAVIGDMQDGKPMDRLVCGDVGFGKTEVALRAAFVAVADGKQVAVLVPTTLLAEQHFQTFSDRFADWPVKIAELSRFRSAKETGAALEGLEQGRKDIAIGTHKLLSRGVQFKDLGLVIIDEEHRFGVRQKEKLKALRAQVDVLTLTATPIPRTLAMALEGLRDFSVIATAPQRRLAIKTFVSPLSEGLIREAVLRELKRGGQVYFLHNEIESIRNMEARLAKLLPEARIRTAHGQMPERELELVMRDFYQVRFNLLLCTTIIETGIDVPTANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTPDEDAVGSQARKRLEAIQMMEELGSGFYLAMQDLEIRGAGEVLGESQSGEMQEVGFALYAEMLNAAVKSLKAGKEPGLAGGLNLGTEINLHAPALLPEDYCADIHERLVLYKRLANCETAEELEALHEELVDRFGLLPDPANVLLDSHRLRIAAKQLGISRIDAGPESLVLQFVPNPPLDPAKIIGLVQSRKNFKLSGQDRLRVDAAMPDVAARVTQARAVLKELG*