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PLM3_127_b2_sep16_scaffold_5155

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_5155_1
CG_Delta_01, Deltaproteobacteria, Proteobacteria, Bacteria

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3..3428
-----------------
DNA (3426bp)
protein (1142aa)
Uncharacterized protein Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5BUM1_NITHN
hypothetical protein
Tax=CG_Delta_01
PLM3_127_b2_sep16_scaffold_5155_2
Bacillus clausii, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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3418..4248
-----------------
DNA (831bp)
protein (277aa)
Uncharacterized protein Tax=Bacillus clausii (strain KSM-K16) RepID=Q5WI50_BACSK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAD63955.1}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus clausii (strain KSM-K16).;"
PLM3_127_b2_sep16_scaffold_5155_3
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4232..5389
-----------------
DNA (1158bp)
protein (386aa)
Putative saccharopine dehydrogenase and relateds oxidoreductase protein Tax=Ralstonia solanacearum (strain GMI1000) RepID=Q8Y0A6_RALSO
transmembrane protein
Putative saccharopine dehydrogenase and relateds oxidoreductase protein {ECO:0000313|EMBL:CAD14840.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum (strain GMI1000) (Pseudomonas solanacearum).;"
PLM3_127_b2_sep16_scaffold_5155_4
Xanthomonas campestris, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5357..5797)
-----------------
DNA (441bp)
protein (147aa)
Conserved protein YuxK Tax=Xanthomonas oryzae pv. oryzicola BLS256 RepID=G7TDR0_9XANT
Membrane protein {ECO:0000313|EMBL:KFA11359.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris pv. musacearum NCPPB 2005.;"
conserved protein YuxK
PLM3_127_b2_sep16_scaffold_5155_5
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5794..6468)
-----------------
DNA (675bp)
protein (225aa)
Uncharacterized protein Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SDL5_9RHIZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHB48044.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
PLM3_127_b2_sep16_scaffold_5155_6
unknown

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comp(6477..6836)
-----------------
DNA (360bp)
protein (120aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_5155_7
Methylobacterium radiotolerans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6867..7445)
-----------------
DNA (579bp)
protein (193aa)
Transcriptional regulator, ArsR family Tax=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) RepID=B1M817_METRJ
ArsR family transcriptional regulator
Transcriptional regulator, ArsR family {ECO:0000313|EMBL:ACB26738.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM; 2831).;"
PLM3_127_b2_sep16_scaffold_5155_8
Batrachochytrium dendrobatidis, Batrachochytrium, Rhizophydiales, Chytridiomycetes, Chytridiomycota, Fungi

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7583..7999
-----------------
DNA (417bp)
protein (139aa)
Putative uncharacterized protein Tax=Batrachochytrium dendrobatidis (strain JAM81 / FGSC 10211) RepID=F4PEX5_BATDJ
Putative uncharacterized protein {ECO:0000313|EMBL:EGF76224.1}; species="Eukaryota; Fungi; Chytridiomycota; Chytridiomycetes; Rhizophydiales; Rhizophydiales incertae sedis; Batrachochytrium.;" source="Batrachochytrium dendrobatidis (strain JAM81 / FGSC 10211) (Frog; chytrid fungus).;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_5155_9

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8037..8552
-----------------
DNA (516bp)
protein (172aa)
hypothetical protein bin=ACD39 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=ACD39 organism_group=Unknown_CP organism_desc=unknown
Uncharacterized protein {ECO:0000313|EMBL:EKD83433.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_5155_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(8562..9230)
-----------------
DNA (669bp)
protein (223aa)
Carboxylesterase bin=GWA2_Methylomirabilis_73_35 species=Alcaligenes faecalis genus=Alcaligenes taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
carboxylesterase
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_5155_11

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9298..9801
-----------------
DNA (504bp)
protein (168aa)
Arginine repressor Tax=mine drainage metagenome RepID=T1AVQ3_9ZZZZ
Arginine repressor {ECO:0000313|EMBL:EQD44824.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
arginine repressor ArgR
PLM3_127_b2_sep16_scaffold_5155_12
Stigmatella aurantiaca, Stigmatella, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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9805..11034
-----------------
DNA (1230bp)
protein (410aa)
Argininosuccinate synthase {ECO:0000256|SAAS:SAAS00214603}; EC=6.3.4.5 {ECO:0000256|SAAS:SAAS00009947};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Stigmatella.;" source="Stigmatella aurantiaca (strain DW4/3-1).;"
argG; argininosuccinate synthase (EC:6.3.4.5)
Argininosuccinate synthase Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q092Z9_STIAD
PLM3_127_b2_sep16_scaffold_5155_13
Hyalangium minutum, Hyalangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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11049..12182
-----------------
DNA (1134bp)
protein (378aa)
Uncharacterized protein Tax=Myxococcus fulvus (strain ATCC BAA-855 / HW-1) RepID=F8CDT6_MYXFH
Uncharacterized protein {ECO:0000313|EMBL:KFE72284.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Hyalangium.;" source="Hyalangium minutum.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_5155_14
Chloracidobacterium thermophilum, Chloracidobacterium, Acidobacteria, Bacteria

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12179..13234
-----------------
DNA (1056bp)
protein (352aa)
N-acetyl-gamma-glutamyl-phosphate reductase (EC:1.2.1.-)
N-acetyl-gamma-glutamyl-phosphate reductase {ECO:0000256|HAMAP-Rule:MF_00150, ECO:0000256|SAAS:SAAS00137393}; Short=AGPR {ECO:0000256|HAMAP-Rule:MF_00150};; EC=1.2.1.38 {ECO:0000256|HAMAP-Rule:MF_00150, ECO:0000256|SAAS:SAAS00137393};; N-acetyl-glutamate semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00150}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Chloracidobacterium.;" source="Chloracidobacterium thermophilum (strain B).;"
N-acetyl-gamma-glutamyl-phosphate reductase Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LKD4_CHLTF
PLM3_127_b2_sep16_scaffold_5155_15
GWA2_Elusimicrobia_69_24_curated, Elusimicrobia, Bacteria

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13238..14398
-----------------
DNA (1161bp)
protein (387aa)
acetylornithine/succinyldiaminopimelate aminotransferase (EC:2.6.1.11)
Acetylornithine aminotransferase bin=GWA2_Elusimicrobia_69_24 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
Tax=GWA2_Elusimicrobia_69_24_curated
PLM3_127_b2_sep16_scaffold_5155_16

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14401..15408
-----------------
DNA (1008bp)
protein (336aa)
Aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain protein Tax=mine drainage metagenome RepID=T1AGQ3_9ZZZZ
Aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain protein {ECO:0000313|EMBL:EQD41080.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
argF; ornithine carbamoyltransferase
PLM3_127_b2_sep16_scaffold_5155_17
GWA2_Elusimicrobia_69_24_curated, Elusimicrobia, Bacteria

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15416..16354
-----------------
DNA (939bp)
protein (313aa)
Acetylglutamate kinase bin=GWA2_Elusimicrobia_69_24 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
argB1; acetylglutamate kinase
Tax=GWA2_Elusimicrobia_69_24_curated
PLM3_127_b2_sep16_scaffold_5155_18
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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16356..17543
-----------------
DNA (1188bp)
protein (396aa)
argH; argininosuccinate lyase (EC:4.3.2.1)
Argininosuccinate lyase {ECO:0000255|HAMAP-Rule:MF_00006}; Short=ASAL {ECO:0000255|HAMAP-Rule:MF_00006};; EC=4.3.2.1 {ECO:0000255|HAMAP-Rule:MF_00006};; Arginosuccinase {ECO:0000255|HAMAP-Rule:MF_00006}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
Argininosuccinate lyase Tax=Sorangium cellulosum (strain So ce56) RepID=ARLY_SORC5
PLM3_127_b2_sep16_scaffold_5155_19
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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17759..18349
-----------------
DNA (591bp)
protein (197aa)
hypothetical protein Tax=Methyloversatilis universalis RepID=UPI00037FC834
17 kDa surface antigen
Tax=RBG_16_Betaproteobacteria_58_11_curated
PLM3_127_b2_sep16_scaffold_5155_20
RLO_Burkholderiales_64_99, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(18418..19371)
-----------------
DNA (954bp)
protein (318aa)
Putative lipoprotein Tax=Desulfurivibrio alkaliphilus (strain DSM 19089 / UNIQEM U267 / AHT2) RepID=D6Z5Z9_DESAT
lipoprotein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_99_curated
PLM3_127_b2_sep16_scaffold_5155_21

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comp(19533..20195)
-----------------
DNA (663bp)
protein (221aa)
Maleylacetoacetate isomerase {ECO:0000313|EMBL:EQD41319.1}; EC=5.2.1.2 {ECO:0000313|EMBL:EQD41319.1};; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
maiA; maleylacetoacetate isomerase (EC:5.2.1.2)
Maleylacetoacetate isomerase Tax=mine drainage metagenome RepID=T1AKM5_9ZZZZ
PLM3_127_b2_sep16_scaffold_5155_22
Sphingomonas sp. BHC-A, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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20203..20580
-----------------
DNA (378bp)
protein (126aa)
fadB; 3-hydroxyacyl-CoA dehydrogenase (EC:1.1.1.35)
NAD-binding 3-hydroxyacyl-CoA dehydrogenase Tax=Sphingobium indicum B90A RepID=I5BHV5_9SPHN
3-hydroxyacyl-CoA dehydrogenase {ECO:0000313|EMBL:KEY99032.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. BHC-A.;"
Displaying 22 items

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