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PLM3_127_b2_sep16_scaffold_5231

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_5231_1

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comp(2..949)
-----------------
DNA (948bp)
protein (316aa)
hypothetical protein Tax=Dyella ginsengisoli RepID=UPI000349A458
Uncharacterized protein {ECO:0000313|EMBL:KKO02978.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
DeoR faimly transcriptional regulator
PLM3_127_b2_sep16_scaffold_5231_2
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1111..1815
-----------------
DNA (705bp)
protein (235aa)
Uncharacterized protein Tax=Burkholderia sp. SJ98 RepID=K8R9F9_9BURK
Uncharacterized protein {ECO:0000313|EMBL:KJZ61101.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_5231_3
Oxalobacteraceae bacterium IMCC9480, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1805..3058
-----------------
DNA (1254bp)
protein (418aa)
hypothetical protein Tax=Pseudoalteromonas haloplanktis RepID=UPI000378C7FC
Uncharacterized protein {ECO:0000313|EMBL:EGF30691.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae.;" source="Oxalobacteraceae bacterium IMCC9480.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_5231_4
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

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comp(3190..4782)
-----------------
DNA (1593bp)
protein (531aa)
TPR domain protein Tax=Salinibacter ruber (strain M8) RepID=D5H5C6_SALRM
hypothetical protein
TPR domain protein {ECO:0000313|EMBL:CBH23231.1}; species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter ruber (strain M8).;"
PLM3_127_b2_sep16_scaffold_5231_5
Arenimonas donghaensis, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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4921..6348
-----------------
DNA (1428bp)
protein (476aa)
peptidase M20 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0002F6E654
Peptidase M20 {ECO:0000313|EMBL:KFL36587.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas donghaensis DSM 18148 = HO3-R19.;"
peptidase M20
PLM3_127_b2_sep16_scaffold_5231_6

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comp(6345..6941)
-----------------
DNA (597bp)
protein (199aa)
Uncharacterized protein Tax=mine drainage metagenome RepID=T1A0F9_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EQD34564.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
nuclease-like protein
PLM3_127_b2_sep16_scaffold_5231_7
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6941..9127)
-----------------
DNA (2187bp)
protein (729aa)
threonine synthase Tax=Xanthomonas arboricola RepID=UPI000304EB3C
threonine synthase
Threonine synthase {ECO:0000313|EMBL:AJC44591.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
PLM3_127_b2_sep16_scaffold_5231_8
R_Gammaproteobacteria_63_22, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9130..11607)
-----------------
DNA (2478bp)
protein (826aa)
Bifunctional aspartokinase/homoserine dehydrogenase II Tax=Salinibacter ruber (strain M8) RepID=D5H6Y3_SALRM
metL; Bifunctional aspartokinase/homoserine dehydrogenase II
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
PLM3_127_b2_sep16_scaffold_5231_9
Desulfohalobium retbaense, Desulfohalobium, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(11727..11999)
-----------------
DNA (273bp)
protein (91aa)
RNP-1 like RNA-binding protein Tax=Desulfohalobium retbaense (strain DSM 5692) RepID=C8X3P0_DESRD
RNP-1 like RNA-binding protein
RNP-1 like RNA-binding protein {ECO:0000313|EMBL:ACV69037.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfohalobiaceae; Desulfohalobium.;" source="Desulfohalobium retbaense (strain DSM 5692).;"
PLM3_127_b2_sep16_scaffold_5231_10
unknown

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comp(12101..12295)
-----------------
DNA (195bp)
protein (65aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_5231_11
Allochromatium vinosum, Allochromatium, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(12389..13504)
-----------------
DNA (1116bp)
protein (372aa)
ABC-2 type transporter Tax=Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / D) RepID=D3RT84_ALLVD
ABC transporter
Transport permease protein {ECO:0000256|RuleBase:RU361157}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Allochromatium.;" source="Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 /; NCIMB 10441 / D) (Chromatium vinosum).;"
PLM3_127_b2_sep16_scaffold_5231_12
Allochromatium vinosum, Allochromatium, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(13501..14322)
-----------------
DNA (822bp)
protein (274aa)
ABC transporter related protein Tax=Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / D) RepID=D3RT83_ALLVD
ABC transporter
ABC transporter related protein {ECO:0000313|EMBL:ADC62392.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Allochromatium.;" source="Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 /; NCIMB 10441 / D) (Chromatium vinosum).;"
PLM3_127_b2_sep16_scaffold_5231_13
Thiorhodococcus sp. AK35, Thiorhodococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(14480..15454)
-----------------
DNA (975bp)
protein (325aa)
Secretion protein HlyD family protein Tax=Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / D) RepID=D3RT82_ALLVD
Membrane-fusion protein {ECO:0000313|EMBL:EXJ13555.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiorhodococcus.;" source="Thiorhodococcus sp. AK35.;"
secretion protein HlyD family protein
PLM3_127_b2_sep16_scaffold_5231_14
R_Gammaproteobacteria_57_10, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(15447..16115)
-----------------
DNA (669bp)
protein (223aa)
Regulatory protein TetR Tax=Thiorhodococcus drewsii AZ1 RepID=G2E8B1_9GAMM
TetR family transcriptional regulator
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_57_10_curated
PLM3_127_b2_sep16_scaffold_5231_15
Methylobacter tundripaludum, Methylobacter, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

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16229..17305
-----------------
DNA (1077bp)
protein (359aa)
Xanthine dehydrogenase {ECO:0000313|EMBL:EGW20948.1}; EC=1.17.1.4 {ECO:0000313|EMBL:EGW20948.1};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylobacter.;" source="Methylobacter tundripaludum SV96.;"
Xanthine dehydrogenase Tax=Methylobacter tundripaludum SV96 RepID=G3J176_9GAMM
dehydrogenase molybdenum attachment maturation factor
PLM3_127_b2_sep16_scaffold_5231_16
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(17357..18586)
-----------------
DNA (1230bp)
protein (410aa)
Uncharacterized protein Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IRN3_RHOCS
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
PLM3_127_b2_sep16_scaffold_5231_17
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(18638..19912)
-----------------
DNA (1275bp)
protein (425aa)
Uncharacterized protein Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IRN3_RHOCS
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
PLM3_127_b2_sep16_scaffold_5231_18
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(20045..20464)
-----------------
DNA (420bp)
protein (140aa)
Biopolymer transport protein ExbD Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HUU2_RUBGI
exbD; biopolymer transport protein ExbD
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
PLM3_127_b2_sep16_scaffold_5231_19
Nitrospirillum amazonense, Nitrospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(20482..20688)
-----------------
DNA (207bp)
protein (69aa)
Biopolymer transport ExbD protein Tax=Azospirillum amazonense Y2 RepID=G1XX89_9PROT
Biopolymer transport ExbD protein {ECO:0000313|EMBL:EGY02112.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Nitrospirillum.;" source="Nitrospirillum amazonense Y2.;"
exbD; biopolymer transport protein ExbD
Displaying 19 items

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