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PLM3_127_b2_sep16_scaffold_4797

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_4797_1
unknown

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2..178
-----------------
DNA (177bp)
protein (59aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_4797_2
BJP_IG2069_Desfulfarculales_53_13, Desulfarculales, Deltaproteobacteria, Proteobacteria, Bacteria

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406..1263
-----------------
DNA (858bp)
protein (286aa)
PAP2 family protein bin=GWC2_Nitrospirae-rel_56_14 species=Pseudomonas denitrificans genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
hypothetical protein
Tax=BJP_IG2069_Desfulfarculales_53_13
PLM3_127_b2_sep16_scaffold_4797_3
Xanthomonas campestris, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1333..2019)
-----------------
DNA (687bp)
protein (229aa)
hydrolase Tax=Xanthomonas arboricola RepID=UPI0002E2F185
Hydrolase {ECO:0000313|EMBL:AKC80977.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris.;"
hydrolase
PLM3_127_b2_sep16_scaffold_4797_4
unknown

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2338..2691
-----------------
DNA (354bp)
protein (118aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_4797_5

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comp(2882..3337)
-----------------
DNA (456bp)
protein (152aa)
Nuclease Tax=mine drainage metagenome RepID=T0ZYC3_9ZZZZ
Nuclease {ECO:0000313|EMBL:EQD33704.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_4797_6
GWF2_Lentisphaerae_57_35_curated, Lentisphaerae, Bacteria

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3420..4190
-----------------
DNA (771bp)
protein (257aa)
Endonuclease/exonuclease/phosphatase bin=GWF2_Lentisphaerae_57_35 species=Desulfobulbus propionicus genus=Desulfobulbus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459
endonuclease/exonuclease/phosphatase
Tax=GWF2_Lentisphaerae_57_35_curated
PLM3_127_b2_sep16_scaffold_4797_7

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4214..6247
-----------------
DNA (2034bp)
protein (678aa)
Multifunctional fatty acid oxidation complex subunit alpha Tax=mine drainage metagenome RepID=T1AB02_9ZZZZ
Multifunctional fatty acid oxidation complex subunit alpha {ECO:0000313|EMBL:EQD57906.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
3-hydroxyacyl-CoA dehydrogenase NAD-binding protein
PLM3_127_b2_sep16_scaffold_4797_8
gamma proteobacterium HTCC5015, Gammaproteobacteria, Proteobacteria, Bacteria

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6360..7421
-----------------
DNA (1062bp)
protein (354aa)
Cyclic nucleotide-binding domain protein Tax=gamma proteobacterium HTCC5015 RepID=B5JWW7_9GAMM
Cyclic nucleotide-binding domain protein {ECO:0000313|EMBL:EDY85892.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium HTCC5015.;"
cyclic nucleotide-binding protein
PLM3_127_b2_sep16_scaffold_4797_9

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comp(7422..7772)
-----------------
DNA (351bp)
protein (117aa)
Type IV pilus assembly PilZ Tax=mine drainage metagenome RepID=T0YT27_9ZZZZ
Type IV pilus assembly PilZ {ECO:0000313|EMBL:EQD36318.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
type IV pilus assembly PilZ
PLM3_127_b2_sep16_scaffold_4797_10
Methylococcus capsulatus, Methylococcus, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7807..8607)
-----------------
DNA (801bp)
protein (267aa)
holB; DNA polymerase III subunit delta' (EC:2.7.7.7)
DNA polymerase III, delta prime subunit {ECO:0000313|EMBL:AAU91792.1}; EC=2.7.7.7 {ECO:0000313|EMBL:AAU91792.1};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylococcus.;" source="Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath).;"
DNA polymerase III, delta prime subunit Tax=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) RepID=Q606M1_METCA
PLM3_127_b2_sep16_scaffold_4797_11
endosymbiont of unidentified scaly snail isolate Monju, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8674..9315)
-----------------
DNA (642bp)
protein (214aa)
Thymidylate kinase {ECO:0000256|HAMAP-Rule:MF_00165}; EC=2.7.4.9 {ECO:0000256|HAMAP-Rule:MF_00165};; dTMP kinase {ECO:0000256|HAMAP-Rule:MF_00165}; species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="endosymbiont of unidentified scaly snail isolate Monju.;"
hypothetical protein Tax=Marinobacterium rhizophilum RepID=UPI000367FC7B
tmk; thymidylate kinase
PLM3_127_b2_sep16_scaffold_4797_12
Ralstonia sp. PBA, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(9305..10372)
-----------------
DNA (1068bp)
protein (356aa)
Aminodeoxychorismate lyase {ECO:0000313|EMBL:EIZ03922.1}; EC=4.1.3.38 {ECO:0000313|EMBL:EIZ03922.1};; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. PBA.;"
Aminodeoxychorismate lyase Tax=Ralstonia sp. PBA RepID=I9W604_9RALS
periplasmic solute-binding protein
PLM3_127_b2_sep16_scaffold_4797_13
Pseudomonas alcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10392..10883)
-----------------
DNA (492bp)
protein (164aa)
3-oxoacyl-[acyl-carrier-protein] synthase 2 {ECO:0000256|PIRNR:PIRNR000447}; EC=2.3.1.179 {ECO:0000256|PIRNR:PIRNR000447};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas alcaligenes OT 69.;"
3-oxoacyl-(acyl carrier protein) synthase II (EC:2.3.1.41)
3-oxoacyl-[acyl-carrier-protein] synthase 2 Tax=Pseudomonas alcaligenes OT 69 RepID=U3HFC7_PSEAC
Displaying 13 items

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