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PLM3_127_b2_sep16_Eisenbacteria_70_8

PLM3_127cm_b2_sep2016_RBG_16_RIF_WS3X_71_46_curated_70_8
In projects: PLM3_127cm_b2_sep2016  |  PLM2016-drep98-anvio  |  PLM2016-NC-80p

Consensus taxonomy: RBG_16_RIF_WS3X_71_46_curated  →  RIF-WS3X  →  Bacteria

Displaying items 1-50 of 463 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
PLM3_127_b2_sep16_scaffold_31682 5 3598 bp 67.40 7.75 48.61
PLM3_127_b2_sep16_scaffold_161355
Species: RBG_16_RIF_WS3X_71_46_curated (66.67%)
3 3546 bp 66.38 6.56 54.48
PLM3_127_b2_sep16_scaffold_17469
Phylum: Proteobacteria (66.67%)
3 4143 bp 69.06 7.82 56.63
PLM3_127_b2_sep16_scaffold_71077 5 3846 bp 69.24 6.86 57.49
PLM3_127_b2_sep16_scaffold_41609
Domain: Bacteria (100%)
3 3370 bp 68.55 7.48 57.69
PLM3_127_b2_sep16_scaffold_58003
Species: Nitrosomonas sp. Is79A3 (50%)
2 2693 bp 65.06 6.96 58.49
PLM3_127_b2_sep16_scaffold_52213
Phylum: Gemmatimonadetes (50%)
4 3646 bp 68.51 8.39 59.65
PLM3_127_b2_sep16_scaffold_87810
Domain: Bacteria (100%)
3 3115 bp 68.15 5.15 60.10
PLM3_127_b2_sep16_scaffold_27653
Species: RBG_16_RIF_WS3X_71_46_curated (100%)
4 3899 bp 71.97 6.23 62.17
PLM3_127_b2_sep16_scaffold_17648
Species: RBG_16_RIF_WS3X_71_46_curated (75%)
4 4122 bp 67.71 7.13 63.46
PLM3_127_b2_sep16_scaffold_38420
Species: RBG_16_RIF_WS3X_71_46_curated (60%)
5 3759 bp 69.25 7.66 65.44
PLM3_127_b2_sep16_scaffold_13311
Domain: Bacteria (60%)
5 6851 bp 65.28 8.21 66.87
PLM3_127_b2_sep16_scaffold_66373 3 2913 bp 61.93 6.39 67.25
PLM3_127_b2_sep16_scaffold_64895
Species: RBG_16_RIF_WS3X_71_46_curated (50%)
4 2522 bp 67.80 7.08 68.28
PLM3_127_b2_sep16_scaffold_14035
Domain: Bacteria (50%)
6 5653 bp 68.69 9.50 68.41
PLM3_127_b2_sep16_scaffold_66008
Domain: Bacteria (100%)
4 4494 bp 66.49 7.64 68.42
PLM3_127_b2_sep16_scaffold_30342
Species: RBG_16_RIF_WS3X_71_46_curated (87.5%)
8 6420 bp 70.33 7.83 68.93
PLM3_127_b2_sep16_scaffold_14536
Domain: Bacteria (60%)
5 6721 bp 68.53 7.79 69.59
PLM3_127_b2_sep16_scaffold_10960
Domain: Bacteria (85.71%)
7 6832 bp 69.50 8.96 69.69
PLM3_127_b2_sep16_scaffold_27242
Species: RBG_16_RIF_WS3X_71_46_curated (80%)
5 5697 bp 69.77 7.48 70.98
PLM3_127_b2_sep16_scaffold_23753
Phylum: Gemmatimonadetes (57.14%)
7 6045 bp 69.66 6.75 71.27
PLM3_127_b2_sep16_scaffold_38349
Species: RBG_16_RIF_WS3X_71_46_curated (100%)
2 2631 bp 68.19 5.70 72.18
PLM3_127_b2_sep16_scaffold_39023
Species: RBG_16_RIF_WS3X_71_46_curated (57.14%)
7 4141 bp 68.15 6.85 72.74
PLM3_127_b2_sep16_scaffold_9010
Species: RBG_16_RIF_WS3X_71_46_curated (71.43%)
7 6435 bp 67.51 7.93 72.96
PLM3_127_b2_sep16_scaffold_124094 5 2592 bp 68.67 7.41 73.26
PLM3_127_b2_sep16_scaffold_38370
Domain: Bacteria (100%)
4 4046 bp 68.78 8.08 73.70
PLM3_127_b2_sep16_scaffold_32665
Domain: Bacteria (80%)
5 4609 bp 68.74 10.48 73.75
PLM3_127_b2_sep16_scaffold_160865
Domain: Bacteria (50%)
6 2648 bp 66.39 6.63 73.87
PLM3_127_b2_sep16_scaffold_112665
Domain: Bacteria (75%)
4 3646 bp 64.23 6.38 74.22
PLM3_127_b2_sep16_scaffold_16768
Species: RBG_16_RIF_WS3X_71_46_curated (83.33%)
6 5401 bp 68.49 6.86 74.26
PLM3_127_b2_sep16_scaffold_49259
Species: RBG_16_RIF_WS3X_71_46_curated (100%)
4 4145 bp 71.07 7.31 74.48
PLM3_127_b2_sep16_scaffold_126810
Domain: Bacteria (100%)
3 2993 bp 66.72 6.01 75.08
PLM3_127_b2_sep16_scaffold_15263
Species: RBG_16_RIF_WS3X_71_46_curated (50%)
4 4485 bp 70.79 8.33 75.18
PLM3_127_b2_sep16_scaffold_12472
Domain: Bacteria (60%)
5 5033 bp 66.60 8.26 75.58
PLM3_127_b2_sep16_scaffold_20682
Class: Betaproteobacteria (80%)
5 3760 bp 63.78 9.14 75.64
PLM3_127_b2_sep16_scaffold_39589 4 2582 bp 68.63 8.60 75.64
PLM3_127_b2_sep16_scaffold_25356
Species: RBG_16_RIF_WS3X_71_46_curated (80%)
5 6120 bp 70.41 7.77 75.69
PLM3_127_b2_sep16_scaffold_67508
Species: RBG_16_RIF_WS3X_71_46_curated (50%)
4 4075 bp 72.05 6.22 75.98
PLM3_127_b2_sep16_scaffold_41695
Domain: Bacteria (53.85%)
13 7663 bp 66.25 5.93 76.50
PLM3_127_b2_sep16_scaffold_69945
Species: RBG_16_RIF_WS3X_71_46_curated (83.33%)
6 3592 bp 69.38 8.02 77.09
PLM3_127_b2_sep16_scaffold_39811
Domain: Bacteria (83.33%)
6 10365 bp 69.90 10.74 77.11
PLM3_127_b2_sep16_scaffold_22189
Domain: Bacteria (70%)
10 9012 bp 68.58 8.11 77.16
PLM3_127_b2_sep16_scaffold_46790
Phylum: Chloroflexi (50%)
4 3230 bp 69.72 10.26 77.46
PLM3_127_b2_sep16_scaffold_8675
Species: RBG_16_RIF_WS3X_71_46_curated (62.5%)
8 8455 bp 67.68 9.35 77.53
PLM3_127_b2_sep16_scaffold_33831
Species: RBG_16_RIF_WS3X_71_46_curated (50%)
6 7091 bp 69.54 8.80 77.85
PLM3_127_b2_sep16_scaffold_17943
Species: RBG_16_RIF_WS3X_71_46_curated (57.14%)
14 14681 bp 70.27 7.50 78.26
PLM3_127_b2_sep16_scaffold_32210
Species: RBG_16_RIF_WS3X_71_46_curated (100%)
3 3779 bp 70.42 7.90 78.27
PLM3_127_b2_sep16_scaffold_11495
Domain: Bacteria (66.67%)
9 8849 bp 67.88 10.15 78.52
PLM3_127_b2_sep16_scaffold_43594
Species: RBG_16_RIF_WS3X_71_46_curated (50%)
8 6007 bp 67.40 6.99 78.66
PLM3_127_b2_sep16_scaffold_32378
Domain: Bacteria (57.14%)
7 3941 bp 70.54 7.50 78.94
Displaying items 1-50 of 463 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.