ggKbase home page

PLM3_60_coex_sep16_scaffold_11688_1

Organism: PLM3_60_coex_sep16_Deltaproteobacteria_56_6

near complete RP 47 / 55 MC: 4 BSCG 48 / 51 MC: 2 ASCG 9 / 38 MC: 2
Location: 14..328

Top 3 Functional Annotations

Value Algorithm Source
RNA-binding protein bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria similarity UNIREF
DB: UNIREF100
  • Identity: 80.6
  • Coverage: 108.0
  • Bit_score: 174
  • Evalue 3.00e-41
putative RNA-binding protein RbpA similarity KEGG
DB: KEGG
  • Identity: 67.6
  • Coverage: 108.0
  • Bit_score: 149
  • Evalue 5.00e-34
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 85.6
  • Coverage: 104.0
  • Bit_score: 186
  • Evalue 1.10e-44

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

RLO_Deltaproteobacteria_57_22 → Deltaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 315
ATGGGTAGTAAATTATATGTTGGCGGTCTGCCTTATTCGATTACCGAAGGGCGGCTGCAAGAAATCTTTTCAGCGCATGGGGCGGTCGAATCCGCCAACGTGATCTCGGATAAGTTTACCGGGCAATCGCGGGGCTTTGGCTTCGTGGAAATGAGTTCTAGCGGCGAGGCCCAAAAGGCCATCGAATCGCTGAACGGCACCCAGCTCGACGGACGCACCCTAACCGTGAATGAAGCCAAACCAATGGCGCGGCGTGATAACGGCGGTGGTGGCGGCGGTGGCGGTGGCCGCGACGGCGGACGCAATCGCTGGTAG
PROTEIN sequence
Length: 105
MGSKLYVGGLPYSITEGRLQEIFSAHGAVESANVISDKFTGQSRGFGFVEMSSSGEAQKAIESLNGTQLDGRTLTVNEAKPMARRDNGGGGGGGGGRDGGRNRW*