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PLM3_60_coex_sep16_Deltaproteobacteria_56_6

PLM3_60cm_coex_sep2016_Deltaproteobacteria_56_6
In projects: PLM3_60cm_coex_sep2016  |  PLM2016-drep98-anvio  |  PLM2016-NC-80p

Consensus taxonomy: Deltaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: PLM3_60cm_coex_sep2016_UNK Curated version: PLM3_60_coex_sep16_CONCOCT_3_curated

Properties

Avg. coverage: 6.49 Longest contig: 31.54 Kbp Bin length: 3.66 Mbp GC content: 55.79 %
Contigs count: 712 Features count: 4334 rRNAs count: 0 tRNAs count: 30

Genome completeness

near complete RP 47 / 55 MC: 4 BSCG 48 / 51 MC: 2 ASCG 9 / 38 MC: 2
Displaying items 201-250 of 712 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
PLM3_60_coex_sep16_scaffold_1811
Class: Deltaproteobacteria (72.73%)
11 12142 bp 56.61 6.57 90.70
PLM3_60_coex_sep16_scaffold_21948
Class: Deltaproteobacteria (100%)
3 3047 bp 57.24 5.12 90.68
PLM3_60_coex_sep16_scaffold_24219
Species: R_Rokubacteria_73_56 (50%)
2 2875 bp 58.64 6.16 90.68
PLM3_60_coex_sep16_scaffold_2217
Class: Deltaproteobacteria (72.73%)
11 13531 bp 55.47 6.60 90.66
PLM3_60_coex_sep16_scaffold_12860
Species: RLO_Deltaproteobacteria_60_19 (50%)
4 4183 bp 59.14 5.77 90.65
PLM3_60_coex_sep16_scaffold_17331
Class: Deltaproteobacteria (66.67%)
3 3498 bp 56.60 6.69 90.65
PLM3_60_coex_sep16_scaffold_3284
Class: Deltaproteobacteria (80%)
10 8986 bp 56.41 6.98 90.64
PLM3_60_coex_sep16_scaffold_5527
Class: Deltaproteobacteria (83.33%)
6 6784 bp 55.97 7.10 90.61
PLM3_60_coex_sep16_scaffold_27051
Species: RLO_Deltaproteobacteria_60_19 (50%)
4 3947 bp 57.94 6.31 90.60
PLM3_60_coex_sep16_scaffold_4325
Class: Deltaproteobacteria (62.5%)
8 7796 bp 56.45 6.75 90.58
PLM3_60_coex_sep16_scaffold_5500
Class: Deltaproteobacteria (70%)
10 11301 bp 57.75 6.38 90.58
PLM3_60_coex_sep16_scaffold_29214
Species: RLO_Deltaproteobacteria_60_16 (66.67%)
3 2581 bp 58.00 7.03 90.55
PLM3_60_coex_sep16_scaffold_3309
Class: Deltaproteobacteria (61.9%)
21 12776 bp 55.49 6.45 90.54
PLM3_60_coex_sep16_scaffold_15274
Class: Betaproteobacteria (60%)
5 5024 bp 60.23 6.57 90.53
PLM3_60_coex_sep16_scaffold_27177
Class: Deltaproteobacteria (85.71%)
7 4789 bp 56.46 6.36 90.52
PLM3_60_coex_sep16_scaffold_21677
Domain: Bacteria (60%)
5 3071 bp 58.09 4.15 90.46
PLM3_60_coex_sep16_scaffold_10899
Species: RLO_Deltaproteobacteria_60_19 (50%)
4 4603 bp 54.83 8.57 90.40
PLM3_60_coex_sep16_scaffold_51661
Class: Deltaproteobacteria (50%)
6 3331 bp 56.80 5.54 90.33
PLM3_60_coex_sep16_scaffold_13247
Species: RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated (50%)
4 4113 bp 57.82 7.59 90.30
PLM3_60_coex_sep16_scaffold_17784
Class: Deltaproteobacteria (83.33%)
12 11116 bp 58.22 6.33 90.19
PLM3_60_coex_sep16_scaffold_46191
Species: RLO_Deltaproteobacteria_60_19 (50%)
6 3749 bp 57.32 5.48 90.18
PLM3_60_coex_sep16_scaffold_7209
Species: RLO_Deltaproteobacteria_60_19 (50%)
8 8924 bp 55.37 6.45 90.13
PLM3_60_coex_sep16_scaffold_20828
Class: Deltaproteobacteria (80%)
5 4122 bp 53.78 6.55 90.10
PLM3_60_coex_sep16_scaffold_20370
Domain: Bacteria (100%)
9 4354 bp 57.69 6.75 90.06
PLM3_60_coex_sep16_scaffold_1628
Class: Deltaproteobacteria (66.67%)
18 12906 bp 56.15 6.38 90.05
PLM3_60_coex_sep16_scaffold_27878
Species: RLO_Deltaproteobacteria_60_19 (100%)
2 2652 bp 59.28 6.84 90.05
PLM3_60_coex_sep16_scaffold_16229
Species: RLO_Deltaproteobacteria_60_19 (50%)
6 6227 bp 57.33 6.00 90.04
PLM3_60_coex_sep16_scaffold_3549
Species: RLO_Deltaproteobacteria_60_19 (55.56%)
9 8632 bp 56.29 6.29 90.01
PLM3_60_coex_sep16_scaffold_4392
Species: RLO_Deltaproteobacteria_60_16 (57.14%)
7 7729 bp 56.54 6.83 89.97
PLM3_60_coex_sep16_scaffold_6573
Class: Deltaproteobacteria (71.43%)
7 6169 bp 55.71 6.10 89.97
PLM3_60_coex_sep16_scaffold_22538
Species: RLO_Deltaproteobacteria_60_19 (100%)
3 2998 bp 57.57 5.15 89.86
PLM3_60_coex_sep16_scaffold_13691
Species: RLO_Deltaproteobacteria_60_19 (50%)
6 4032 bp 57.47 5.25 89.81
PLM3_60_coex_sep16_scaffold_25790
Species: RLO_Deltaproteobacteria_60_19 (100%)
3 3702 bp 57.00 6.65 89.79
PLM3_60_coex_sep16_scaffold_23459
Class: Deltaproteobacteria (70%)
10 8420 bp 56.43 6.64 89.75
PLM3_60_coex_sep16_scaffold_5451
Class: Deltaproteobacteria (50%)
6 6830 bp 56.38 6.59 89.74
PLM3_60_coex_sep16_scaffold_9612
Domain: Bacteria (63.64%)
11 7524 bp 55.18 6.06 89.71
PLM3_60_coex_sep16_scaffold_18593
Species: RLO_Deltaproteobacteria_60_19 (80%)
5 4549 bp 57.64 5.41 89.69
PLM3_60_coex_sep16_scaffold_11848
Class: Deltaproteobacteria (80%)
5 4382 bp 55.11 7.50 89.69
PLM3_60_coex_sep16_scaffold_22592
Species: RLO_Deltaproteobacteria_60_16 (60%)
5 2994 bp 56.45 5.41 89.68
PLM3_60_coex_sep16_scaffold_29822
Class: Deltaproteobacteria (50%)
4 4296 bp 57.47 5.27 89.66
PLM3_60_coex_sep16_scaffold_10212
Species: RLO_Deltaproteobacteria_60_19 (75%)
4 4779 bp 58.42 6.78 89.64
PLM3_60_coex_sep16_scaffold_14054
Class: Deltaproteobacteria (100%)
8 5094 bp 55.50 6.30 89.63
PLM3_60_coex_sep16_scaffold_10241
Class: Deltaproteobacteria (80%)
5 5664 bp 57.20 5.75 89.62
PLM3_60_coex_sep16_scaffold_29175
Species: RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated (50%)
2 2582 bp 57.28 5.58 89.58
PLM3_60_coex_sep16_scaffold_14757
Class: Deltaproteobacteria (60%)
5 5268 bp 56.51 6.32 89.58
PLM3_60_coex_sep16_scaffold_20621
Species: RLO_Deltaproteobacteria_60_19 (50%)
4 4194 bp 55.48 6.55 89.56
PLM3_60_coex_sep16_scaffold_18220 5 3399 bp 55.22 7.77 89.50
PLM3_60_coex_sep16_scaffold_45727
Species: RLO_Deltaproteobacteria_60_19 (75%)
4 2515 bp 54.79 6.50 89.46
PLM3_60_coex_sep16_scaffold_4898
Class: Deltaproteobacteria (93.33%)
15 18199 bp 52.46 7.17 89.46
PLM3_60_coex_sep16_scaffold_33345
Domain: Bacteria (83.33%)
6 2968 bp 54.58 7.13 89.45
Displaying items 201-250 of 712 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.