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PLM3_60_coex_sep16_scaffold_3821_4

Organism: PLM3_60_coex_sep16_Actinobacteridae_Actinomycetales_73_7

near complete RP 46 / 55 BSCG 45 / 51 MC: 2 ASCG 11 / 38 MC: 3
Location: 1754..2581

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma 28 subunit, Sig B/F/G subfamily Tax=Frankia sp. (strain EuI1c) RepID=E3IV06_FRASU similarity UNIREF
DB: UNIREF100
  • Identity: 44.1
  • Coverage: 272.0
  • Bit_score: 201
  • Evalue 7.90e-49
sigma-B/F/G subfamily RNA polymerase sigma-28 factor similarity KEGG
DB: KEGG
  • Identity: 44.1
  • Coverage: 272.0
  • Bit_score: 201
  • Evalue 2.20e-49
RNA polymerase, sigma 28 subunit, Sig B/F/G subfamily {ECO:0000313|EMBL:ADP78886.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EuI1c).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 44.1
  • Coverage: 272.0
  • Bit_score: 201
  • Evalue 1.10e-48

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Taxonomy

Frankia sp. EuI1c → Frankia → Frankiales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 828
ATGGCGTCCGCAGTCCTCGATAGCGACCTCGAACGGATTCTCGCTCCGACCCCCCACGACGAGCCCCCGCTGCAGGTCCGCCCCGACGACGAGGCCGCGGTGCAGCGGGTCGAGGGCTGGTTCCAGGCATACGCGCAGACCAGGGACCCGGCACTGCGCGAGCGGATCATCCTCGCCTATCTCGGCCTGGCCGACCGGCTGGCCGACCGCTACCGAGGCAACCGCTCCATCCCGCTCGAGGATCTGCGCCAGGTCGCCCGGCTCGGCCTGGTCAAGGCGGTCGACCGCTACGAGCCGGACCGGGCCAACCCGTTCATCCCCTACGCCGTGGCCACCGTGATCGGCGAGATCAAGCGCCACCTGCGGGACGCGAGCTGGCGCATCCGGGTGCCGCGGGGCACCAAGGACCTGGCCCTGCGCCTGTGCAAGGCCATCGACGAGCTGCCCCAGCAGCTCGGGCACTCCCCGACCGTCGCCGAGCTGGCCGAGCATCTGAAGGCGACCGAGGAAGAGGTGCTCGAGGCGATCGAGGTGGCCCAGACCCGCTCGGCGCCCTCCCTCGACCAGCCGGCCGGTGAGGACGGCGACGCGGTGCTCGGCGACTTCATCGCCGAGACCGGCTTCCGCGAGGAACCGGAGGACCTCCTCGTCCTGCCCCAGCTGATCGGCCGGCTGCCCGAGCGGGAGCGCGAGATCGTGCTGCTCCGCTACGTCGAGGAGCTCACCCAGGACGAGATCGCCCTGCGCATGCGGATCTCCCAGATGCACGTGTCGCGGCTGCTCCGGCGAGCGATCGAGCGCATGCGGGCGCAGCTCGTCGAGGCCTGA
PROTEIN sequence
Length: 276
MASAVLDSDLERILAPTPHDEPPLQVRPDDEAAVQRVEGWFQAYAQTRDPALRERIILAYLGLADRLADRYRGNRSIPLEDLRQVARLGLVKAVDRYEPDRANPFIPYAVATVIGEIKRHLRDASWRIRVPRGTKDLALRLCKAIDELPQQLGHSPTVAELAEHLKATEEEVLEAIEVAQTRSAPSLDQPAGEDGDAVLGDFIAETGFREEPEDLLVLPQLIGRLPEREREIVLLRYVEELTQDEIALRMRISQMHVSRLLRRAIERMRAQLVEA*