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PLM3_60_coex_sep16_scaffold_32223_2

Organism: PLM3_60_coex_sep16_Alphaproteobacteria_Rhizobiales_61_7

near complete RP 44 / 55 MC: 5 BSCG 42 / 51 MC: 1 ASCG 7 / 38 MC: 1
Location: 1102..4260

Top 3 Functional Annotations

Value Algorithm Source
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 85.8
  • Coverage: 1069.0
  • Bit_score: 1811
  • Evalue 0.0
Transcription-repair-coupling factor Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q214M6_RHOPB similarity UNIREF
DB: UNIREF100
  • Identity: 85.8
  • Coverage: 1069.0
  • Bit_score: 1811
  • Evalue 0.0
transcription-repair coupling factor similarity KEGG
DB: KEGG
  • Identity: 85.8
  • Coverage: 1069.0
  • Bit_score: 1811
  • Evalue 0.0

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Taxonomy

Rhodopseudomonas palustris → Rhodopseudomonas → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 3159
ATGAAATCGCCGACACGATCGCCTGCCGAATTGCTTGCGCCCGGCCGCGCGCTGACTTTTGCCAACGTCGCGGAGGGCGCGGAGGGCCTCGTCGTTTCCGACCTCGCGCGAGCGGTGGCGGCGCGGCCGAGGCCGCCAGCGGTCAGCCTCGCCGTGGTGTGCCGCGACGGACCGCGCATGCAGCAGCTGGCGCGCGCGCTGGAATTCTTCGCTCCTGATCTGCCGGTGATGCAGTTTCCGGCCTGGGATTGCCAGCCCTACGACCGGGTCTCGCCGCACGGCGGCGTTCTGGCGCAGCGGCTGACCACGCTGGCGCGTTTGTCGCGTCTTGAGGGCAGCGAGAAGCCGCTGATCGTGCTGACCACGGTCAATGCCATCGTGCAGCGCGTGCCGGCGCGCGAAATCATCGCGGCGCAGGCACTATCTGTTGCGCCCGGCCACGTGGTGCCGATGGACTCCATCGTGTCGTGGCTGGAGCATAACGGCTACAACCGTTCTTCCACCGTGCGCGAACCCGGCGAATACGCCGTTCGCGGCGGCATTCTCGATCTGTTTCCCGCCGGGCTCGATCAGCCGGTGCGTTTCGACTTTTTCGGCGACACGCTGGAGTCGATCCGCAGCTTCGATGCGGAAACCCAGCGCACGCTCTTGGACATGCGCTCGCTCGATCTGGTTCCGATCTCGGAATTTCAACTGGTCACCGAGACCATTCGCCGCTTTCGGATGGGGTACGTCGCAGCCTTCGGCGCCCCCGAGCGCGACGAGGAGCATTGGCTGCCGCTGTTCCAGGAGCGGATGGATACGCTGTTCGATTATCTCGGCGACGCGCCGGTTGCGATCGAACCGCAAAGCGAGGACGCCGCGCGCGAGCGTTTCAAGCAGATCGCGGACTATTACGAGGCGCGGCGCGAGGCGATGGAGCATCCCGGCGGCGGCGCGATCTACAAGCCCTTGCCACCCGACCGGCTGTATCTCACCGAAGACGAGTGGACCAAACGCCTGGATCAATCCGCGCTGGCACGGCTCACGCCATTCGCGGTGCCCGACGGCAGCGCCAATACGGTCGATGCCGGCGCGCGGGCTGGACGCAACTTCACGCCGGAACGCGCCGACAGCAGCGTCAACGTGTTCGAGGCCGTGGTCGCGCATGTCGGGGCATTGCACGCTAGTCGCAAGAAAGTGGTGATCGCGCTGTGGAGCGAGGGCTCGCGCGATCGCATGGGCAGCATGCTGAAGGATCACAAGCTCAGCAACCTCACCAGCGTCAACAGTTGGCGCACCGTGCAGGCCACGCCGCGCAACGAGGCCATGCTGGCGGTGGTCGGCATGGAATCCGGTTTCGAGACCGACAATGTCGCCGTCATCAGCGAACAGGACATTCTCGGCGACCGGCTGGTGCGGCCACGAAAGGCGAGCCGCAAGCTCGACAATTTCATCTCCGAGGTCACCAGCCTTGCCGCCGGCGATCTCGTGGTTCATGTCGAGCACGGCATCGGCCGTTTTATCGGCCTGCAGACGCTCGAGGTATCGGGCGCACCGCACGATTGCCTCGAGCTGCATTACGCGGCCGATACCAAACTGTTTCTGCCGGTCGAGAACATCGAACTGCTGTCGCGCTACGGCTCCGACCACGCCAATGTCGAGCTCGACCGGTTAGGCGGCAGCGGCTGGCAGGCGCGAAAAGCCAAACTCAAGAACCGCATTCGCGAGATCGCCGGTGAACTGATCAAGATCGCGGCCGAGCGGCATTTGCATGAAGCGCCGAAAATGCCGGTGCAGCCGCATGTCTATGACGAGTTCTGCGCACGCTTCCCCTATGAGGAAACCGAAGACCAGCTCGGCGCCATCAATGCCACGCTGAAGGACCTCGAAAGCGGCCGGCCGATGGACCGGCTGATCTGCGGCGACGTCGGATTCGGCAAGACCGAGGTGGCGTTGCGCGCGGCATTCGCGGTCGCGCTCGACGGCAAACAGGTCGCCGTCGTGGTCCCGACCACGCTGCTGGCGCGGCAACACGCCAAGACCTTCACCGAGCGGTTCCGCGGCTTTCCGGTCAATGTCGCGCAGGCCTCGCGCCTGATCGCGGCCAAGGAACTGACGCAGGTGAAGAAGAACCTCACCGACGGTGCGGTCGATATCGTGGTCGGCACCCACGCGCTGCTTGGGAAGTCGATCAAGTTCAGGGATCTCGGTCTGCTGATTGTCGATGAAGAGCAGCATTTCGGCGTCAGCCACAAGGAACGCCTGAAGCAGCTGCGGGCCGAGGTCCATGTGCTGACGCTGAGCGCGACCCCGATTCCGCGCACGCTGCAACTGGCGCTGACGGGGGTGCGCGACCTCTCCATCATCGCCTCGCCGCCGGTCGACCGGCTGGCGGTCCGCACCTTCGTGGCGCCGCACGATCCCTTGATGATCCGCGAAGCGTTGCTGCGCGAGCGCTATCGCGGCGGCCAGGCCTTCTACGTCGTGCCGCGCATTGAAGATCTCGCAGGGGTGAAGAACTTTCTCGACAAGAACGTGCCGGAGATGAAAGTCGCGGTCGCGCATGGGCAGATGCCGCCGACGGTCATCGAAGACATCATGTCGGCGTTCTATGACGGCAAGTACGATATCCTGCTGTCGACCACGATCATCGAGTCCGGCCTCGACATTCCCACCGCCAATACGCTGATCGTGCATCGCGCCGACATGTTCGGGCTGGCGCAGCTGTATCAGTTGCGCGGAAGGGTAGGGCGCTCGAAGCTGCGCGCCTATTCGCTGTTTACCCTGCCGGCGCAGCAGAAGATCACAGCCCAGGCCGAGCGGCGGCTGAAAGTGCTGCAATCGCTGGAAACCCTGGGGGCCGGGTTCCAGTTGGCCTCGCACGATCTGGATATCCGCGGCGCCGGCAATCTGCTCGGCGAGGAACAATCCGGGCATATCAAGGAAGTCGGCTTCGAGCTTTACCAGTCGATGCTCGAGGACGCTATCCTCGAACAGAAAGCCGGCGGCGCGATCCGGCGTGAAGAATATGCGCCGCAGATCAGCGTCGAGGCGCCGATCCTCATCCCCGAGGCCTATGTCCCCGACCTCGACCTCAGGATGGGGTTGTATCGCCGCTTGGGCGAGCTGGAAGACCGCGCGGCGATCGACAGCTTCGCCGCCGAGATGATCGACCGG
PROTEIN sequence
Length: 1053
MKSPTRSPAELLAPGRALTFANVAEGAEGLVVSDLARAVAARPRPPAVSLAVVCRDGPRMQQLARALEFFAPDLPVMQFPAWDCQPYDRVSPHGGVLAQRLTTLARLSRLEGSEKPLIVLTTVNAIVQRVPAREIIAAQALSVAPGHVVPMDSIVSWLEHNGYNRSSTVREPGEYAVRGGILDLFPAGLDQPVRFDFFGDTLESIRSFDAETQRTLLDMRSLDLVPISEFQLVTETIRRFRMGYVAAFGAPERDEEHWLPLFQERMDTLFDYLGDAPVAIEPQSEDAARERFKQIADYYEARREAMEHPGGGAIYKPLPPDRLYLTEDEWTKRLDQSALARLTPFAVPDGSANTVDAGARAGRNFTPERADSSVNVFEAVVAHVGALHASRKKVVIALWSEGSRDRMGSMLKDHKLSNLTSVNSWRTVQATPRNEAMLAVVGMESGFETDNVAVISEQDILGDRLVRPRKASRKLDNFISEVTSLAAGDLVVHVEHGIGRFIGLQTLEVSGAPHDCLELHYAADTKLFLPVENIELLSRYGSDHANVELDRLGGSGWQARKAKLKNRIREIAGELIKIAAERHLHEAPKMPVQPHVYDEFCARFPYEETEDQLGAINATLKDLESGRPMDRLICGDVGFGKTEVALRAAFAVALDGKQVAVVVPTTLLARQHAKTFTERFRGFPVNVAQASRLIAAKELTQVKKNLTDGAVDIVVGTHALLGKSIKFRDLGLLIVDEEQHFGVSHKERLKQLRAEVHVLTLSATPIPRTLQLALTGVRDLSIIASPPVDRLAVRTFVAPHDPLMIREALLRERYRGGQAFYVVPRIEDLAGVKNFLDKNVPEMKVAVAHGQMPPTVIEDIMSAFYDGKYDILLSTTIIESGLDIPTANTLIVHRADMFGLAQLYQLRGRVGRSKLRAYSLFTLPAQQKITAQAERRLKVLQSLETLGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQSMLEDAILEQKAGGAIRREEYAPQISVEAPILIPEAYVPDLDLRMGLYRRLGELEDRAAIDSFAAEMIDR