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PLM3_60_coex_sep16_Rokubacteria_71_14

PLM3_60cm_coex_sep2016_Rokubacteria_71_14
In projects: PLM3_60cm_coex_sep2016  |  PLM2016-drep98-anvio  |  PLM2016-NC-80p  |  rokubacteria_ggkbase

Consensus taxonomy: Rokubacteria  →  Bacteria

Displaying items 1-50 of 766 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
PLM3_60_coex_sep16_scaffold_30349
Species: GWA2_Rokubacteria_73_35_curated (100%)
1 2521 bp 73.38 14.04 99.96
PLM3_60_coex_sep16_scaffold_17534
Species: R_Rokubacteria_73_56 (100%)
1 3476 bp 74.77 13.25 99.94
PLM3_60_coex_sep16_scaffold_22465
Species: R_Rokubacteria_73_56 (100%)
1 3006 bp 75.98 10.88 99.30
PLM3_60_coex_sep16_scaffold_17594
Species: CSP1_6_Rokubacteria (100%)
1 3468 bp 71.45 15.18 100.00
PLM3_60_coex_sep16_scaffold_14963
Species: CSP1_6_Rokubacteria (100%)
1 3821 bp 67.08 13.31 99.95
PLM3_60_coex_sep16_scaffold_30536
Species: RLO_Rokubacteria_71_22 (50%)
2 2512 bp 74.16 11.29 93.75
PLM3_60_coex_sep16_scaffold_21915
Species: Burkholderiaceae bacterium 16 (50%)
2 3050 bp 70.82 12.89 99.54
PLM3_60_coex_sep16_scaffold_27692
Species: GWA2_Rokubacteria_70_23_curated (50%)
2 2661 bp 66.89 9.02 96.62
PLM3_60_coex_sep16_scaffold_51556
Species: RLO_Deltaproteobacteria_60_19 (50%)
2 2675 bp 68.93 14.24 83.21
PLM3_60_coex_sep16_scaffold_14059
Species: Sphaerobacter thermophilus (50%)
2 3970 bp 71.69 15.79 99.60
PLM3_60_coex_sep16_scaffold_19822
Species: R_Betaproteobacteria_64_14 (50%)
2 3235 bp 70.26 13.63 94.59
PLM3_60_coex_sep16_scaffold_26644
Species: R_Rokubacteria_73_56 (50%)
2 2723 bp 70.18 13.72 97.61
PLM3_60_coex_sep16_scaffold_23799
Species: GWA2_Rokubacteria_73_35_curated (50%)
2 2905 bp 67.33 9.50 88.30
PLM3_60_coex_sep16_scaffold_26659
Species: RLO_Rokubacteria_71_22 (50%)
2 2722 bp 71.23 10.47 91.48
PLM3_60_coex_sep16_scaffold_30662
Species: RLO_Rokubacteria_71_22 (50%)
2 2506 bp 70.27 13.05 87.51
PLM3_60_coex_sep16_scaffold_19599
Species: GWA2_Rokubacteria_70_23_curated (50%)
2 3256 bp 72.21 13.27 99.97
PLM3_60_coex_sep16_scaffold_47727
Species: CSP1_5_NC10 (50%)
2 3080 bp 71.01 14.90 95.55
PLM3_60_coex_sep16_scaffold_51412
Species: R_Rokubacteria_73_56 (50%)
2 3039 bp 69.50 14.96 92.30
PLM3_60_coex_sep16_scaffold_16500
Species: GWA2_Rokubacteria_73_35_curated (50%)
2 3601 bp 74.87 16.62 97.89
PLM3_60_coex_sep16_scaffold_29602
Species: GWC2_Rokubacteria_70_16_curated (50%)
2 3104 bp 69.20 9.09 73.16
PLM3_60_coex_sep16_scaffold_32351
Species: R_Rokubacteria_73_56 (66.67%)
3 2981 bp 70.01 13.54 89.87
PLM3_60_coex_sep16_scaffold_28960
Phylum: Rokubacteria (66.67%)
3 2594 bp 70.55 13.94 96.22
PLM3_60_coex_sep16_scaffold_26041
Domain: Bacteria (100%)
3 2760 bp 65.94 10.00 68.48
PLM3_60_coex_sep16_scaffold_30549
Phylum: Proteobacteria (66.67%)
3 2512 bp 73.25 16.96 98.17
PLM3_60_coex_sep16_scaffold_16542
Phylum: Proteobacteria (66.67%)
3 3595 bp 70.46 9.55 98.89
PLM3_60_coex_sep16_scaffold_25423
Phylum: Proteobacteria (66.67%)
3 2800 bp 71.14 10.66 94.50
PLM3_60_coex_sep16_scaffold_29897
Class: Alphaproteobacteria (66.67%)
3 2544 bp 72.48 10.44 93.87
PLM3_60_coex_sep16_scaffold_16560
Species: RLO_Rokubacteria_71_22 (66.67%)
3 4158 bp 72.01 12.45 100.00
PLM3_60_coex_sep16_scaffold_24298
Domain: Bacteria (66.67%)
3 2871 bp 72.45 10.29 67.61
PLM3_60_coex_sep16_scaffold_54741
Phylum: Proteobacteria (66.67%)
3 2646 bp 69.16 12.41 99.66
PLM3_60_coex_sep16_scaffold_20103
Domain: Bacteria (66.67%)
3 3211 bp 73.12 16.63 95.48
PLM3_60_coex_sep16_scaffold_29153
Class: Betaproteobacteria (66.67%)
3 2584 bp 69.08 10.27 96.25
PLM3_60_coex_sep16_scaffold_7803
Genus: Candidatus Entotheonella (66.67%)
3 5593 bp 70.75 11.75 89.36
PLM3_60_coex_sep16_scaffold_47868
Phylum: Rokubacteria (66.67%)
3 2770 bp 71.66 14.46 95.31
PLM3_60_coex_sep16_scaffold_8393
Species: CSP1_6_Rokubacteria (66.67%)
3 5357 bp 70.21 14.03 99.18
PLM3_60_coex_sep16_scaffold_18561
Phylum: Rokubacteria (66.67%)
3 3362 bp 73.94 12.63 88.79
PLM3_60_coex_sep16_scaffold_25474
Species: Candidatus Entotheonella sp. TSY1 (66.67%)
3 2797 bp 65.50 10.62 77.12
PLM3_60_coex_sep16_scaffold_24589
Phylum: Rokubacteria (100%)
3 2853 bp 69.86 12.15 88.54
PLM3_60_coex_sep16_scaffold_11193
Phylum: Rokubacteria (66.67%)
3 4527 bp 71.99 12.72 98.28
PLM3_60_coex_sep16_scaffold_19545
Phylum: Rokubacteria (66.67%)
3 3821 bp 69.56 9.58 79.30
PLM3_60_coex_sep16_scaffold_23007 3 2962 bp 71.64 17.78 100.07
PLM3_60_coex_sep16_scaffold_32952
Domain: Bacteria (100%)
3 3913 bp 69.00 10.96 92.46
PLM3_60_coex_sep16_scaffold_17005
Species: RLO_Rokubacteria_71_22 (66.67%)
3 3536 bp 72.34 12.30 97.23
PLM3_60_coex_sep16_scaffold_24100
Class: Betaproteobacteria (66.67%)
3 2883 bp 72.53 9.52 98.75
PLM3_60_coex_sep16_scaffold_29211
Phylum: Rokubacteria (66.67%)
3 3098 bp 69.27 15.49 91.90
PLM3_60_coex_sep16_scaffold_30637
Species: R_Rokubacteria_73_56 (66.67%)
3 2508 bp 71.05 12.56 99.16
PLM3_60_coex_sep16_scaffold_45894
Class: Betaproteobacteria (66.67%)
3 2857 bp 72.24 13.39 83.90
PLM3_60_coex_sep16_scaffold_23299
Phylum: Proteobacteria (66.67%)
3 2941 bp 70.76 12.34 99.05
PLM3_60_coex_sep16_scaffold_28825
Phylum: Proteobacteria (66.67%)
3 2600 bp 66.31 7.90 78.92
PLM3_60_coex_sep16_scaffold_21259
Phylum: Proteobacteria (66.67%)
3 3107 bp 70.23 14.68 94.24
Displaying items 1-50 of 766 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.