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PLM3_60_coex_sep16_scaffold_1024_23

Organism: PLM3_60_coex_sep16_Actinobacteridae_Actinomycetales_73_16

near complete RP 48 / 55 MC: 1 BSCG 50 / 51 MC: 4 ASCG 12 / 38 MC: 3
Location: comp(16956..17771)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma 28 subunit, Sig B/F/G subfamily Tax=Frankia sp. (strain EuI1c) RepID=E3IV06_FRASU similarity UNIREF
DB: UNIREF100
  • Identity: 63.7
  • Coverage: 289.0
  • Bit_score: 342
  • Evalue 3.70e-91
sigma-B/F/G subfamily RNA polymerase sigma-28 factor similarity KEGG
DB: KEGG
  • Identity: 63.7
  • Coverage: 289.0
  • Bit_score: 342
  • Evalue 1.00e-91
RNA polymerase, sigma 28 subunit, Sig B/F/G subfamily {ECO:0000313|EMBL:ADP78886.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EuI1c).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 63.7
  • Coverage: 289.0
  • Bit_score: 342
  • Evalue 5.20e-91

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Taxonomy

Frankia sp. EuI1c → Frankia → Frankiales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 816
GTGAGCGCCAACGAGGCCGACGACATGGCCACCGGCGTCCTCGAGGGAGCGGCCCTGGCCGGCCGGGGGGTGGACCGCGCCTACGCCAAGGACCTGTTCCGCCGCTTCGTCGAGCACCGCGACCCCGCCCTGCGCGAGGAGCTGGTGGGGGTCCACCTGCCGTTGGTCGAGTACCTCGCCCGCCGCTTCCGCAACCGCGGCGAGCCGCTCGAAGACCTCGTCCAGGTCGGCACCATCGGGCTGCTGAAGGCCATCGACCGCTTCGACCTGGACCGCGAGGTGGAGTTCTCCACCTACGCCACCCCCACGATCGTCGGCGAGCTCAAGCGCCACTTCCGGGACAAGGGCTGGGCGGTGCGCGTGCCGCGGCGCCTCCAGGAGCTGAACCTGTCGCTCAACAAGGTGGTGGCCGAGCTCTCCCAGGAGGTCGGGCGCTCCCCGACGATCGCCGAGATCGCCTCCAAGGTGCACCTGAGCGAGGAGGAGGTGCTGGAGGGCCTCGACACCTCCAACGCCTACGCGGTGGTCTCCCTGGACGCGCCGGCCGGCGGCGACGACACGCCCTCGGTCAGCGACCACATCGGCGTCGAGGACGAGAGCCTGGAGGCGCTGGAGTACCGGGCTTCCCTCGGGCCGCTGATCGCCGGGCTGCCCGAGCGCGAGCGCCGCATCCTGTACCTGCGGTTCTTCGGCGGCATGACCCAGTCGCAGATCGCCGCCCGGCTGGGCATCTCCCAGATGCACGTCTCGCGCCTGCTGAACCGCACCCTGGCCGCGCTGCGGGCGGGATTGCTTGCGGACGAGGAGACCGAGTAG
PROTEIN sequence
Length: 272
VSANEADDMATGVLEGAALAGRGVDRAYAKDLFRRFVEHRDPALREELVGVHLPLVEYLARRFRNRGEPLEDLVQVGTIGLLKAIDRFDLDREVEFSTYATPTIVGELKRHFRDKGWAVRVPRRLQELNLSLNKVVAELSQEVGRSPTIAEIASKVHLSEEEVLEGLDTSNAYAVVSLDAPAGGDDTPSVSDHIGVEDESLEALEYRASLGPLIAGLPERERRILYLRFFGGMTQSQIAARLGISQMHVSRLLNRTLAALRAGLLADEETE*