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PLM3_60_coex_sep16_scaffold_8062_2

Organism: PLM3_60_coex_sep16_Actinobacteridae_Actinomycetales_73_16

near complete RP 48 / 55 MC: 1 BSCG 50 / 51 MC: 4 ASCG 12 / 38 MC: 3
Location: comp(194..718)

Top 3 Functional Annotations

Value Algorithm Source
hypothetical protein Tax=Frankia sp. BMG5.12 RepID=UPI000378CF58 similarity UNIREF
DB: UNIREF100
  • Identity: 46.2
  • Coverage: 158.0
  • Bit_score: 124
  • Evalue 5.90e-26
RNA polymerase sigma-70 factor, sigma-E family {ECO:0000313|EMBL:KJE25259.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. CpI1-S.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 46.8
  • Coverage: 158.0
  • Bit_score: 128
  • Evalue 5.80e-27
rpoE; RNA polymerase, sigma-24 subunit, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 42.5
  • Coverage: 167.0
  • Bit_score: 121
  • Evalue 1.90e-25

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Taxonomy

Frankia sp. CpI1-S → Frankia → Frankiales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 525
ATGGCAGGCGACGACAGGGAGTTCCTCGACTTCTTCGCCGACGAGTTCTGGTCGCTTCGGCGGATCGGGTTCCTGCTGACCGGCGACTGGGACGAAGCGGAGGAGCTGGCCCAGGAGGCGATGGCCCGCACCTTCGCGGCCTGGCCGCGGGTGCGCGGCTACGACCGCCCGGCCGCCTTCGCCCGCAAGGTGCTGCTCAACCGGCACCGGTCGCTGCTGCGTCGGGCGGTCGTCGAGGCCCGCCACCTGCTCGCCAGCCGGCCCCAGGAACGCCACCAGCCGGACTTCAGCGGCGACGACCTGATCCTGTGGCAGGCGCTGGGGCGGCTCCCCGCCCGCCAGCGGACCGCGATCGTGCTCCGCTACTACCTGGACCTGTCCGAGGCGGAGGTCGCCCGCCAGCTCGGCGTCCCGGCCGGCACCGTCAAGTCCCTGGTCCACCGCGGCCTGGCCCGCCTACGCGTCCGGCTCGGCGCGGAGTACGCCGGCGAGCGCCTGACCAGCAACACGGAGGTGGGACCATGA
PROTEIN sequence
Length: 175
MAGDDREFLDFFADEFWSLRRIGFLLTGDWDEAEELAQEAMARTFAAWPRVRGYDRPAAFARKVLLNRHRSLLRRAVVEARHLLASRPQERHQPDFSGDDLILWQALGRLPARQRTAIVLRYYLDLSEAEVARQLGVPAGTVKSLVHRGLARLRVRLGAEYAGERLTSNTEVGP*