ggKbase home page

PLM4_65_b1_redo_sep16_scaffold_109984_4

Organism: PLM4_65_b1_sep16_Acidobacteria_68_8

near complete RP 42 / 55 BSCG 44 / 51 ASCG 12 / 38 MC: 1
Location: comp(2360..2551)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 80.3
  • Coverage: 61.0
  • Bit_score: 101
  • Evalue 3.60e-19
rpoD; RNA polymerase sigma factor rpod; K03086 RNA polymerase primary sigma factor bin=bin7_NC10_sister species=Cystobacter fuscus genus=Cystobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10 similarity UNIREF
DB: UNIREF100
  • Identity: 77.0
  • Coverage: 61.0
  • Bit_score: 93
  • Evalue 5.30e-17
RpoD subfamily RNA polymerase sigma-70 factor similarity KEGG
DB: KEGG
  • Identity: 75.0
  • Coverage: 60.0
  • Bit_score: 92
  • Evalue 2.60e-17

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Thermoanaerobaculum aquaticum → Thermoanaerobaculum → Acidobacteria → Bacteria

Sequences

DNA sequence
Length: 192
CCGCGCGAGGAAGAGGTTCTCGCGAAGCGTTTCGGTCTTTCAGACGGCACCGAGCACACCCTCGAAGAGGTCGGCCGGATCCACAACGTCACCCGCGAGCGCATTCGGCAGATCGAGTCCAAGGCGCTGCGGAAGCTCCGCCATCCGTCGCGCGCCGGGAAGCTCAAGCCGTTCCTGGATACCGGGCTCTGA
PROTEIN sequence
Length: 64
PREEEVLAKRFGLSDGTEHTLEEVGRIHNVTRERIRQIESKALRKLRHPSRAGKLKPFLDTGL*