ggKbase home page

PLM4_65_b1_redo_sep16_scaffold_2148

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_2148_1
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..310)
DNA (309bp) protein (103aa)
hypothetical protein Tax=Halomonas sp. KM-1 RepID=UPI000288E0ED
Uncharacterized protein {ECO:0000313|EMBL:EWY42478.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_2148_2
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(451..1359)
DNA (909bp) protein (303aa)
Adenosine kinase Tax=Geobacter sulfurreducens RepID=D7AHP6_GEOSK
adenosine kinase
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_2148_3
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(1364..2230)
DNA (867bp) protein (289aa)
mtaP; methylthioadenosine phosphorylase (EC:2.4.2.28)
S-methyl-5''''-thioadenosine phosphorylase Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI00035EC0A8
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_2148_4
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(2314..2712)
DNA (399bp) protein (133aa)
Methylmalonyl-CoA epimerase Tax=Pyrococcus yayanosii (strain CH1 / JCM 16557) RepID=F8AHI6_PYRYC
methylmalonyl-CoA epimerase
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_2148_5
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(2709..3668)
DNA (960bp) protein (320aa)
LAO/AO transporter ATPase; K07588 LAO/AO transport system kinase [EC:2.7.-.-] bin=bin3_NC10 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
LAO/AO transport system kinase
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM4_65_b1_redo_sep16_scaffold_2148_6
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(3668..4825)
DNA (1158bp) protein (386aa)
acyl-CoA dehydrogenase Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI00035E6D13
acyl-CoA dehydrogenase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
PLM4_65_b1_redo_sep16_scaffold_2148_7
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

4884..5705
DNA (822bp) protein (274aa)
Monofunctional biosynthetic peptidoglycan transglycosylase bin=GWC2_Deltaproteobacteria_55_46 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_55_46 organism_group=Deltaproteobacteria organism_desc=Clade sibling to the Geobacter/Pelobacter
monofunctional biosynthetic peptidoglycan transglycosylase
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_2148_8
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

5749..6192
DNA (444bp) protein (148aa)
CBS domain containing protein Tax=Marinithermus hydrothermalis (strain DSM 14884 / JCM 11576 / T1) RepID=F2NNI7_MARHT
hypothetical protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_2148_9
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6199..6921
DNA (723bp) protein (241aa)
Methyltransferase Tax=Leptolyngbya sp. Heron Island J RepID=U9VT60_9CYAN
Methyltransferase {ECO:0000313|EMBL:ETX06178.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
methyltransferase
PLM4_65_b1_redo_sep16_scaffold_2148_10
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

6914..7693
DNA (780bp) protein (260aa)
Methyltransferase type 11 Tax=uncultured bacterium ws198A12 RepID=I1X5I8_9BACT
type 11 methyltransferase
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_2148_11
Kineococcus radiotolerans, Kineococcus, Kineosporiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7706..8143)
DNA (438bp) protein (146aa)
NUDIX hydrolase Tax=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) RepID=A6W6C5_KINRD
NUDIX hydrolase
NUDIX hydrolase {ECO:0000313|EMBL:ABS02364.1}; species="Bacteria; Actinobacteria; Kineosporiales; Kineosporiaceae; Kineococcus.;" source="Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 /; SRS30216).;"
PLM4_65_b1_redo_sep16_scaffold_2148_12
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(8140..9639)
DNA (1500bp) protein (500aa)
Diguanylate kinase (EC:2.7.7.65)
Diguanylate cyclase Tax=uncultured bacterium 293 RepID=E3T615_9BACT
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_2148_13
Moorea producens, Moorea, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(9658..11115)
DNA (1458bp) protein (486aa)
Glycerol-3-phosphate dehydrogenase Tax=Moorea producens 3L RepID=F4XMP2_9CYAN
Glycerol-3-phosphate dehydrogenase {ECO:0000313|EMBL:EGJ33951.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Moorea.;" source="Moorea producens 3L.;"
glycerol-3-phosphate dehydrogenase
PLM4_65_b1_redo_sep16_scaffold_2148_14
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(11112..12653)
DNA (1542bp) protein (514aa)
serine phosphatase bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
serine/threonine phosphatase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM4_65_b1_redo_sep16_scaffold_2148_15
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(12790..13806)
DNA (1017bp) protein (339aa)
threonine aldolase Tax=Acidobacteriaceae bacterium TAA166 RepID=UPI0003B4AF33
threonine aldolase
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_2148_16
Tolypothrix sp. PCC 7601, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

13856..15334
DNA (1479bp) protein (493aa)
alpha-amylase (EC:3.2.1.1)
Glucan 1,4-alpha-maltohexaosidase Tax=Microcoleus vaginatus FGP-2 RepID=F5UFK4_9CYAN
Cytoplasmic alpha-amylase {ECO:0000313|EMBL:EKE97207.1}; species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix sp. PCC 7601.;"
PLM4_65_b1_redo_sep16_scaffold_2148_17
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

15346..16815
DNA (1470bp) protein (490aa)
gatB; aspartyl/glutamyl-tRNA amidotransferase subunit B (EC:6.3.5.-)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01P01_SOLUE
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
PLM4_65_b1_redo_sep16_scaffold_2148_18
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

16899..17486
DNA (588bp) protein (196aa)
Uncharacterized protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAX6_GEMAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAH39382.1}; species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC; 100505).;"
PLM4_65_b1_redo_sep16_scaffold_2148_19
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(17640..18584)
DNA (945bp) protein (315aa)
Phosphoesterase PA-phosphatase related protein Tax=candidate division ZIXI bacterium RBG-1 RepID=T0MI86_9BACT
phosphoesterase PA-phosphatase-like protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_2148_20
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(18581..20176)
DNA (1596bp) protein (532aa)
methylmalonyl-CoA mutase (EC:5.4.99.2)
Methylmalonyl-CoA mutase Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LE98_CHLTF
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_2148_21
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

20274..20582
DNA (309bp) protein (103aa)
Putative uncharacterized protein Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01PV1_SOLUE
hypothetical protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_2148_22
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(20902..21633)
DNA (732bp) protein (244aa)
eno; phosphopyruvate hydratase; K01689 enolase [EC:4.2.1.11] bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
enolase
Tax=RBG_16_Acidobacteria_70_10_curated
Displaying 22 items

View Taxonomy