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PLM4_65_coex_sep16Gammaproteobacteria_66_10

PLM4_65cm_coex_sep2016_Proteobacteria_66_10
In projects: PLM4_65cm_coex_sep2016  |  PLM2016-drep98-anvio  |  PLM2016-NC-80p

Consensus taxonomy: Proteobacteria  →  Bacteria

Description

from PLM4_65_coex_sep16_CONCOCT_75

Displaying items 1-50 of 288 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
PLM4_65_coex_sep16_scaffold_34936
Class: Betaproteobacteria (100%)
3 2513 bp 62.99 6.57 80.46
PLM4_65_coex_sep16_scaffold_34651
Species: Nitrosomonas communis (50%)
2 2526 bp 64.33 7.07 98.10
PLM4_65_coex_sep16_scaffold_33596
Class: Betaproteobacteria (100%)
5 2573 bp 65.45 8.10 87.91
PLM4_65_coex_sep16_scaffold_95362
Species: RLO_Burkholderiales_64_99 (50%)
2 2631 bp 62.98 6.84 96.01
PLM4_65_coex_sep16_scaffold_31955
Class: Betaproteobacteria (100%)
3 2648 bp 63.07 8.44 98.45
PLM4_65_coex_sep16_scaffold_31731
Species: RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated (75%)
4 2658 bp 66.29 8.01 94.70
PLM4_65_coex_sep16_scaffold_51015
Class: Betaproteobacteria (60%)
5 2665 bp 65.78 8.11 94.00
PLM4_65_coex_sep16_scaffold_31239
Species: R_Acidobacteria_59_13 (66.67%)
3 2682 bp 65.81 8.56 98.88
PLM4_65_coex_sep16_scaffold_30674
Species: Thioalkalivibrio thiocyanoxidans (50%)
2 2709 bp 63.34 7.42 95.24
PLM4_65_coex_sep16_scaffold_29975
Class: Betaproteobacteria (75%)
4 2746 bp 64.38 11.31 100.73
PLM4_65_coex_sep16_scaffold_110757
Class: Betaproteobacteria (100%)
4 2753 bp 65.71 7.57 91.65
PLM4_65_coex_sep16_scaffold_29681
Species: R_Betaproteobacteria_65_24 (50%)
2 2762 bp 63.76 6.68 87.11
PLM4_65_coex_sep16_scaffold_29628
Species: R_Betaproteobacteria_66_14 (100%)
3 2765 bp 63.36 6.56 94.50
PLM4_65_coex_sep16_scaffold_29278
Species: Sedimenticola sp. SIP-G1 (50%)
2 2783 bp 63.71 12.40 99.60
PLM4_65_coex_sep16_scaffold_41213
Class: Betaproteobacteria (66.67%)
3 2788 bp 65.93 8.98 99.00
PLM4_65_coex_sep16_scaffold_28553
Class: Gammaproteobacteria (75%)
4 2825 bp 66.55 8.44 89.10
PLM4_65_coex_sep16_scaffold_28129
Class: Gammaproteobacteria (100%)
4 2849 bp 65.78 7.90 78.98
PLM4_65_coex_sep16_scaffold_26238
Class: Betaproteobacteria (60%)
5 2964 bp 63.23 10.83 82.66
PLM4_65_coex_sep16_scaffold_26179
Class: Alphaproteobacteria (60%)
5 2968 bp 64.66 10.61 94.71
PLM4_65_coex_sep16_scaffold_56632
Class: Betaproteobacteria (66.67%)
3 2987 bp 66.15 8.74 101.34
PLM4_65_coex_sep16_scaffold_25530
Species: R_Betaproteobacteria_66_14 (75%)
4 3013 bp 69.60 7.97 94.89
PLM4_65_coex_sep16_scaffold_64734
Class: Betaproteobacteria (100%)
5 3028 bp 65.69 6.79 88.18
PLM4_65_coex_sep16_scaffold_40540
Domain: Bacteria (50%)
4 3050 bp 67.08 8.02 90.10
PLM4_65_coex_sep16_scaffold_24889
Class: Gammaproteobacteria (100%)
4 3058 bp 66.55 7.46 93.10
PLM4_65_coex_sep16_scaffold_24785
Phylum: Proteobacteria (55.56%)
9 3064 bp 64.98 9.50 84.69
PLM4_65_coex_sep16_scaffold_24708
Class: Alphaproteobacteria (50%)
4 3071 bp 62.36 9.67 89.09
PLM4_65_coex_sep16_scaffold_24465
Class: Betaproteobacteria (75%)
4 3090 bp 67.31 9.08 90.19
PLM4_65_coex_sep16_scaffold_24248
Species: RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated (50%)
2 3106 bp 64.49 10.87 96.59
PLM4_65_coex_sep16_scaffold_23673
Class: Betaproteobacteria (66.67%)
3 3150 bp 66.35 6.90 95.71
PLM4_65_coex_sep16_scaffold_23410
Class: Betaproteobacteria (50%)
6 3172 bp 62.61 12.25 90.10
PLM4_65_coex_sep16_scaffold_28940
Class: Betaproteobacteria (50%)
8 3320 bp 63.58 7.95 72.92
PLM4_65_coex_sep16_scaffold_21326
Class: Alphaproteobacteria (50%)
4 3345 bp 67.95 6.64 100.36
PLM4_65_coex_sep16_scaffold_21298
Class: Betaproteobacteria (66.67%)
3 3348 bp 68.40 7.03 95.52
PLM4_65_coex_sep16_scaffold_20474
Class: Betaproteobacteria (50%)
4 3426 bp 63.84 8.89 74.87
PLM4_65_coex_sep16_scaffold_52441
Species: RLO_Betaproteobacteria_68_20 (50%)
6 3428 bp 62.28 10.11 94.52
PLM4_65_coex_sep16_scaffold_20314
Order: Xanthomonadales (50%)
4 3441 bp 66.00 10.33 89.97
PLM4_65_coex_sep16_scaffold_39409
Species: RLO_Betaproteobacteria_68_20 (83.33%)
6 3450 bp 66.55 7.61 90.17
PLM4_65_coex_sep16_scaffold_19111
Class: Betaproteobacteria (50%)
4 3562 bp 64.96 9.35 74.96
PLM4_65_coex_sep16_scaffold_18508
Class: Betaproteobacteria (80%)
5 3633 bp 65.24 8.05 97.69
PLM4_65_coex_sep16_scaffold_18416
Class: Betaproteobacteria (100%)
5 3641 bp 66.00 11.54 88.16
PLM4_65_coex_sep16_scaffold_18232
Species: RBG_16_Betaproteobacteria_66_20_curated (50%)
4 3665 bp 67.91 7.82 89.39
PLM4_65_coex_sep16_scaffold_18192
Phylum: Proteobacteria (50%)
4 3670 bp 69.26 7.07 96.73
PLM4_65_coex_sep16_scaffold_26809
Class: Betaproteobacteria (66.67%)
6 3688 bp 65.86 8.91 83.87
PLM4_65_coex_sep16_scaffold_17801
Class: Betaproteobacteria (80%)
5 3717 bp 63.14 7.34 85.15
PLM4_65_coex_sep16_scaffold_17596
Order: Rhodospirillales (60%)
5 3742 bp 64.35 11.62 96.29
PLM4_65_coex_sep16_scaffold_17515
Species: RLO_Betaproteobacteria_68_20 (50%)
4 3751 bp 67.40 8.20 99.73
PLM4_65_coex_sep16_scaffold_17467
Species: RLO_Betaproteobacteria_68_20 (50%)
4 3758 bp 66.34 9.06 94.28
PLM4_65_coex_sep16_scaffold_30576
Phylum: Proteobacteria (83.33%)
6 3815 bp 64.04 6.53 84.85
PLM4_65_coex_sep16_scaffold_21265
Class: Gammaproteobacteria (60%)
5 3850 bp 65.30 8.53 91.87
PLM4_65_coex_sep16_scaffold_22094
Class: Betaproteobacteria (100%)
4 3862 bp 68.46 10.88 83.58
Displaying items 1-50 of 288 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.