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qh_1_UNK

In projects: QH_1  |  diaphorachaeota

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 21.16 Longest contig: 66.06 Kbp Bin length: 43.26 Mbp GC content: 61.13 %
Contigs count: 18764 Features count: 57383 rRNAs count: 15 tRNAs count: 0

Genome completeness

partial RP 42 / 55 MC: 36 BSCG 39 / 51 MC: 35 ASCG 38 / 38 MC: 38
Displaying items 751-800 of 18764 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qh_1_scaffold_16838
Species: Halococcus saccharolyticus (100%)
1 1273 bp 68.11 16.50 41.95
qh_1_scaffold_18427
Species: Salinibacter ruber (66.67%)
3 1565 bp 58.98 47.48 41.98
qh_1_scaffold_12999 1 1529 bp 54.02 6.41 41.99
qh_1_scaffold_25360 4 3043 bp 57.02 8.87 42.00
qh_1_scaffold_11395 2 1678 bp 60.37 5.30 42.01
qh_1_scaffold_22496 2 1018 bp 54.13 7.37 42.14
qh_1_scaffold_25752
Species: Halomicrobium mukohataei (100%)
1 1580 bp 67.97 35.95 42.15
qh_1_scaffold_14735 2 2035 bp 50.47 4.67 42.16
qh_1_scaffold_19085 3 3251 bp 50.51 6.92 42.17
qh_1_scaffold_15875 1 1328 bp 53.31 8.21 42.24
qh_1_scaffold_12254
Order: Natrialbales (60%)
5 3000 bp 52.77 16.43 42.30
qh_1_scaffold_17773 3 1893 bp 56.95 28.26 42.31
qh_1_scaffold_5066 7 7575 bp 49.62 5.65 42.34
qh_1_scaffold_11551 1 1663 bp 53.04 6.49 42.39
qh_1_scaffold_4159 7 5328 bp 53.30 5.99 42.40
qh_1_scaffold_25692
Species: Halorhabdus tiamatea (50%)
2 2207 bp 64.43 45.17 42.41
qh_1_scaffold_11570
Species: Halosimplex carlsbadense (100%)
3 2016 bp 66.32 11.16 42.41
qh_1_scaffold_7871 2 2129 bp 53.22 7.09 42.41
qh_1_scaffold_17896
Species: halophilic archaeon DL31 (100%)
1 1216 bp 53.04 14.06 42.43
qh_1_scaffold_13987 3 3061 bp 42.86 71.41 42.44
qh_1_scaffold_21077
Species: Halococcus morrhuae (100%)
1 1667 bp 47.69 5.28 42.47
qh_1_scaffold_28531 2 1433 bp 58.76 12.56 42.50
qh_1_scaffold_12339
Phylum: Cyanobacteria (66.67%)
3 1588 bp 48.49 71.47 42.51
qh_1_scaffold_20692 2 1593 bp 54.99 6.21 42.56
qh_1_scaffold_16171
Species: Halorhabdus utahensis (50%)
2 1311 bp 64.99 11.44 42.56
qh_1_scaffold_37955
Species: Halococcus thailandensis (50%)
2 1120 bp 62.41 17.14 42.59
qh_1_scaffold_23006
Species: Natronomonas pharaonis (50%)
2 1000 bp 62.80 15.50 42.60
qh_1_scaffold_23458
Species: Draconibacterium sp. JN14CK-3 (100%)
1 1915 bp 56.19 5.38 42.61
qh_1_scaffold_19641
Species: Rhizobium sp. (50%)
2 1132 bp 51.94 48.06 42.67
qh_1_scaffold_19407
Species: Natronococcus jeotgali (50%)
2 1827 bp 68.42 24.19 42.69
qh_1_scaffold_15874 2 1328 bp 56.55 94.65 42.70
qh_1_scaffold_10535 2 1770 bp 53.50 10.73 42.71
qh_1_scaffold_21032
Species: halophilic archaeon J07HB67 (50%)
2 1074 bp 60.61 12.20 42.74
qh_1_scaffold_38542 3 1438 bp 48.75 4.87 42.77
qh_1_scaffold_14779
Species: Salinibacter ruber (50%)
2 1395 bp 67.60 9.82 42.80
qh_1_scaffold_16665
Species: Lygus hesperus (50%)
2 1282 bp 53.28 6.94 42.82
qh_1_scaffold_41471
Species: Halomicrobium mukohataei (100%)
1 1338 bp 60.16 13.75 42.83
qh_1_scaffold_12843 2 1541 bp 47.89 4.61 42.83
qh_1_scaffold_3814
Class: Halobacteria (60%)
5 3318 bp 62.09 18.93 42.86
qh_1_scaffold_24058 4 1700 bp 57.71 6.12 42.88
qh_1_scaffold_5976 4 2979 bp 54.08 5.87 42.90
qh_1_scaffold_11588 3 2321 bp 51.87 5.99 42.91
qh_1_scaffold_17770 3 1223 bp 42.52 48.90 42.93
qh_1_scaffold_33043 2 1188 bp 59.93 8.25 42.93
qh_1_scaffold_9981 4 3434 bp 39.25 51.43 42.98
qh_1_scaffold_22468 1 1019 bp 44.46 4.81 42.98
qh_1_scaffold_9206 3 1933 bp 55.25 9.21 42.99
qh_1_scaffold_1615 8 5621 bp 52.30 8.40 43.02
qh_1_scaffold_13748 3 1470 bp 51.43 5.99 43.06
qh_1_scaffold_36998
Species: Natronomonas moolapensis (50%)
2 1894 bp 64.78 8.61 43.08
Displaying items 751-800 of 18764 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.