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qh_1_UNK

In projects: QH_1  |  diaphorachaeota

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 21.16 Longest contig: 66.06 Kbp Bin length: 43.26 Mbp GC content: 61.13 %
Contigs count: 18764 Features count: 57383 rRNAs count: 15 tRNAs count: 0

Genome completeness

partial RP 42 / 55 MC: 36 BSCG 39 / 51 MC: 35 ASCG 38 / 38 MC: 38
Displaying items 401-450 of 18764 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qh_1_scaffold_22459 1 1019 bp 54.86 6.97 32.09
qh_1_scaffold_15566 1 1345 bp 53.16 5.50 32.12
qh_1_scaffold_10101 2 1818 bp 47.19 9.24 32.18
qh_1_scaffold_12577
Species: Natronolimnobius innermongolicus (50%)
2 1566 bp 54.66 19.92 32.18
qh_1_scaffold_9352 4 3449 bp 46.39 6.00 32.27
qh_1_scaffold_14996
Species: Halosimplex carlsbadense (50%)
2 1381 bp 59.59 19.48 32.37
qh_1_scaffold_18265
Species: Haloquadratum sp. J07HQX50 (50%)
2 2167 bp 66.59 37.66 32.40
qh_1_scaffold_19485
Species: Halococcus saccharolyticus (50%)
2 1139 bp 52.59 5.71 32.40
qh_1_scaffold_18316 2 1194 bp 61.64 8.54 32.41
qh_1_scaffold_2996
Order: Halobacteriales (60%)
5 11314 bp 62.46 12.56 32.43
qh_1_scaffold_37556 2 1183 bp 56.55 6.00 32.46
qh_1_scaffold_14764 2 1874 bp 62.43 28.55 32.50
qh_1_scaffold_20030
Species: Natronomonas pharaonis (50%)
2 1115 bp 67.98 20.45 32.56
qh_1_scaffold_15707 2 1336 bp 50.30 5.69 32.56
qh_1_scaffold_18267 2 1197 bp 54.55 7.10 32.58
qh_1_scaffold_19042
Species: Halococcus salifodinae (100%)
1 1160 bp 55.09 4.57 32.59
qh_1_scaffold_12095 2 1610 bp 50.99 7.08 32.61
qh_1_scaffold_26816
Species: Halorubrum arcis (50%)
2 1398 bp 61.16 6.72 32.62
qh_1_scaffold_22961 2 1001 bp 52.35 4.40 32.67
qh_1_scaffold_42349 1 1230 bp 37.40 6.67 32.68
qh_1_scaffold_4943 4 2841 bp 52.87 6.05 32.74
qh_1_scaffold_17492 1 1237 bp 62.49 15.52 32.74
qh_1_scaffold_40444
Species: Natronobacterium gregoryi (50%)
2 1365 bp 64.76 12.16 32.75
qh_1_scaffold_21333
Species: Salinibacter ruber (100%)
1 1062 bp 52.64 6.87 32.77
qh_1_scaffold_16441 3 2146 bp 48.60 7.13 32.99
qh_1_scaffold_2897 6 5453 bp 55.53 9.83 33.01
qh_1_scaffold_33359
Species: Haloarcula marismortui (66.67%)
3 1806 bp 56.31 6.76 33.06
qh_1_scaffold_29394
Species: Natronomonas moolapensis (50%)
2 1433 bp 62.94 9.56 33.08
qh_1_scaffold_7705
Species: Halococcus salifodinae (100%)
1 2158 bp 48.84 10.66 33.09
qh_1_scaffold_36681
Species: Acyrthosiphon pisum (100%)
1 1323 bp 30.69 4.46 33.11
qh_1_scaffold_11064 2 1711 bp 53.30 6.43 33.14
qh_1_scaffold_11203 2 1697 bp 53.15 5.01 33.24
qh_1_scaffold_19156 2 1155 bp 64.68 7.79 33.25
qh_1_scaffold_10962 2 1723 bp 60.53 6.67 33.26
qh_1_scaffold_9518 2 1891 bp 53.68 5.82 33.32
qh_1_scaffold_7857
Species: Halomicrobium mukohataei (100%)
2 2132 bp 51.88 11.26 33.35
qh_1_scaffold_27325 2 1509 bp 56.13 6.30 33.40
qh_1_scaffold_35139 2 1320 bp 61.52 8.33 33.41
qh_1_scaffold_18535 2 1185 bp 50.21 6.67 33.42
qh_1_scaffold_9873 2 1847 bp 43.91 7.53 33.46
qh_1_scaffold_9444 3 2584 bp 53.06 6.73 33.55
qh_1_scaffold_18455 1 1189 bp 60.39 16.74 33.56
qh_1_scaffold_18224
Species: RLO_PLX_64_10 (50%)
2 1866 bp 47.53 121.44 33.60
qh_1_scaffold_17782
Species: Halobacterium salinarum (50%)
2 1222 bp 63.18 8.10 33.63
qh_1_scaffold_10538 3 3255 bp 50.84 8.54 33.64
qh_1_scaffold_13595 3 1480 bp 52.16 5.20 33.65
qh_1_scaffold_22599 2 1014 bp 58.38 4.24 33.73
qh_1_scaffold_25605
Species: Halococcus morrhuae (50%)
2 1529 bp 53.76 22.89 33.75
qh_1_scaffold_17517
Species: Salinibacter ruber (100%)
1 1235 bp 62.75 19.43 33.77
qh_1_scaffold_9244 3 1928 bp 61.41 24.95 33.77
Displaying items 401-450 of 18764 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.