ggKbase home page

qh_1_scaffold_915_24

Organism: QH_1_Halosimplex_carlsbadense_67_29

near complete RP 30 / 55 MC: 3 BSCG 28 / 51 MC: 2 ASCG 35 / 38 MC: 5
Location: comp(20684..21826)

Top 3 Functional Annotations

Value Algorithm Source
Nonsense mediated mRNA decay protein n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0D0L8_9EURY similarity UNIREF
DB: UNIREF100
  • Identity: 85.8
  • Coverage: 380.0
  • Bit_score: 662
  • Evalue 3.00e-187
Nonsense mediated mRNA decay protein {ECO:0000313|EMBL:ELZ28237.1}; TaxID=797114 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halosimplex.;" source="Halosimplex ca similarity UNIPROT
DB: UniProtKB
  • Identity: 85.8
  • Coverage: 380.0
  • Bit_score: 662
  • Evalue 4.10e-187
nonsense mediated mRNA decay-like protein similarity KEGG
DB: KEGG
  • Identity: 70.8
  • Coverage: 380.0
  • Bit_score: 558
  • Evalue 1.70e-156

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Halosimplex carlsbadense → Halosimplex → Halobacteriales → Halobacteria → Euryarchaeota → Archaea

Sequences

DNA sequence
Length: 1143
ATGAGTCGCTCCGGCGAGTTCTGCCCGCGCTGCGGGGACGAGACCGAGGCGGACCTGAGCGCCCGCCAGGCGCGAGCGGGCGGCGACGGCGTCCGCGACCCCGACAGCGTGCTCTGTGACAGCTGTTACTTCGAGGAGTTCGACCTCGTCGACGCGCCCGAGCGCATCGACGTGCGCGTCTGTTCGCGGTGTGGCGCGGTCCACCGCGGGAACCGCTGGGTCGACGTCGGCGCGGAGGACTACACCGACATCGCCGTCGAGGAGGTCTCCGACGCGCTCGGCGTCCACCTCGACGCGACGGACGTGAGCTGGGAGGTCGCGCCGGAACAGCTCGACGAGAACAACATCCGGATGCACTGCCAGTTCTCGGGCGTCGTCCGCGGGACGCTCGTCTCCGAGGCGGTCGTCGTCCCGGTGAAGATCGCCCGCCAGACCTGCGACCGCTGTGGCCGGATCGCCGGCGGCTCCTACGCCGCGGTCGTACAGGTCCGCGCCGAGGAGCGAACGCCGACGCAAGCCGAACAGCAGCGCGCCCGGGAGACCGCAGAGGCCTACATCGCCGACCGCGAGGCGACGGGCGACCGCAACGCCTTCATCACGGAGGTCACCGAGGTCGACGAGGGGCTGAACATGAAGATCTCCACCAATCAGATGGGCCAGGGGATCGCAAAGCGGATCGTCGAGCAATTAGGTGGAACCTACGAGGACTACGAAACGCTCGTGACCGAGGACAGCGACGGCAACGAGGTATACCGCGTGACGTTCGCGGTCCGACTCCCGCGGTACCGCCCCGGCGAGGTGGTCGACCCCGAGGACGAGGGCGGGCCGGTCCTCGTCAGGAGCGTCCGCGGGACCCTCAAGGGCACCCGGTTACCGACGGGCGAACACTACGAGGCGAGCTTCGAGGACGGCGACGCACCGGAGGCGCGGCGGCTCGGGACCCGCGAGGACGCCCAGCCGACCACCGTCGTCGCCGTCGAAGACGAGAACGCCGTGCAGGTGCTCGACCCCGAGACCTACGAGGCCAGGACGGTCCCGCGGCCGGACTACTTCGACCCCGCCGCCGAGGAGGTCCCCGTGATCAAGAGCCGCGCGGGCCTGCACGTGCTGCCGGACGACGGAGGCGACGAGCGGGATGACTGA
PROTEIN sequence
Length: 381
MSRSGEFCPRCGDETEADLSARQARAGGDGVRDPDSVLCDSCYFEEFDLVDAPERIDVRVCSRCGAVHRGNRWVDVGAEDYTDIAVEEVSDALGVHLDATDVSWEVAPEQLDENNIRMHCQFSGVVRGTLVSEAVVVPVKIARQTCDRCGRIAGGSYAAVVQVRAEERTPTQAEQQRARETAEAYIADREATGDRNAFITEVTEVDEGLNMKISTNQMGQGIAKRIVEQLGGTYEDYETLVTEDSDGNEVYRVTFAVRLPRYRPGEVVDPEDEGGPVLVRSVRGTLKGTRLPTGEHYEASFEDGDAPEARRLGTREDAQPTTVVAVEDENAVQVLDPETYEARTVPRPDYFDPAAEEVPVIKSRAGLHVLPDDGGDERDD*