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QH_1_Halobacteriales_69_12

In projects: QH_1  |  diaphorachaeota  |  archaea_ggkbase

Consensus taxonomy: Halobacteriales  →  Halobacteria  →  Euryarchaeota  →  Archaea

Taxonomy override: Euryarchaeota

Metagenomic Context

Parent: qh_1_UNK

Properties

Avg. coverage: 11.74 Longest contig: 15.48 Kbp Bin length: 1.30 Mbp GC content: 68.50 %
Contigs count: 249 Features count: 1594 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 13 / 55 MC: 1 BSCG 15 / 51 MC: 1 ASCG 22 / 38
Displaying items 101-150 of 249 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qh_1_scaffold_2926
Class: Halobacteria (75%)
8 6293 bp 69.09 11.98 96.73
qh_1_scaffold_1309
Order: Halobacteriales (83.33%)
12 7110 bp 71.05 11.97 93.59
qh_1_scaffold_1923
Order: Halobacteriales (50%)
12 9023 bp 65.47 11.94 70.05
qh_1_scaffold_4640
Order: Halobacteriales (85.71%)
7 5983 bp 71.75 11.93 93.26
qh_1_scaffold_3496
Order: Halobacteriales (55.56%)
9 9535 bp 68.75 11.93 84.89
qh_1_scaffold_4272
Order: Halobacteriales (60%)
5 4135 bp 72.04 11.92 98.52
qh_1_scaffold_9991
Order: Halobacteriales (60%)
5 3844 bp 69.41 11.91 90.84
qh_1_scaffold_3681
Order: Natrialbales (50%)
4 3386 bp 69.73 11.90 76.28
qh_1_scaffold_2775
Order: Halobacteriales (60%)
5 6604 bp 71.08 11.90 88.04
qh_1_scaffold_3038
Order: Halobacteriales (60%)
10 8332 bp 68.86 11.89 72.12
qh_1_scaffold_13792
Order: Halobacteriales (66.67%)
6 4589 bp 71.82 11.85 92.63
qh_1_scaffold_3307
Order: Halobacteriales (55.56%)
9 5393 bp 70.98 11.83 84.22
qh_1_scaffold_7767
Species: Halosimplex carlsbadense (50%)
4 4120 bp 70.07 11.82 96.63
qh_1_scaffold_3838
Class: Halobacteria (85.71%)
7 5875 bp 69.28 11.80 63.42
qh_1_scaffold_4015
Species: Haloquadratum walsbyi (75%)
4 3221 bp 63.21 11.80 90.62
qh_1_scaffold_4168
Order: Halobacteriales (87.5%)
8 7391 bp 72.71 11.78 90.72
qh_1_scaffold_3263
Order: Halobacteriales (66.67%)
12 8154 bp 69.76 11.76 85.17
qh_1_scaffold_1623
Genus: Haloarcula (50%)
4 5606 bp 65.70 11.76 83.32
qh_1_scaffold_17383
Order: Halobacteriales (80%)
5 3069 bp 67.55 11.76 82.40
qh_1_scaffold_4288
Class: Halobacteria (85.71%)
7 5518 bp 71.29 11.76 82.04
qh_1_scaffold_6146
Class: Halobacteria (80%)
5 4160 bp 71.11 11.75 55.96
qh_1_scaffold_6330
Order: Halobacteriales (50%)
4 4280 bp 70.40 11.73 100.30
qh_1_scaffold_569
Class: Halobacteria (93.33%)
15 15484 bp 71.06 11.73 82.13
qh_1_scaffold_3442
Order: Halobacteriales (100%)
5 3952 bp 73.56 11.72 85.63
qh_1_scaffold_8447
Order: Halobacteriales (60%)
10 6688 bp 70.83 11.71 69.26
qh_1_scaffold_2215
Class: Halobacteria (57.14%)
7 7000 bp 70.39 11.70 77.01
qh_1_scaffold_2890
Order: Halobacteriales (60%)
5 3931 bp 66.70 11.65 90.97
qh_1_scaffold_2958
Order: Halobacteriales (50%)
4 3875 bp 69.88 11.64 85.55
qh_1_scaffold_3355
Species: Haloarcula vallismortis (60%)
5 5648 bp 65.72 11.61 64.32
qh_1_scaffold_9778
Order: Halobacteriales (57.14%)
7 4124 bp 66.61 11.61 79.87
qh_1_scaffold_5862
Order: Halobacteriales (55.56%)
9 3720 bp 64.87 11.61 90.56
qh_1_scaffold_4041
Order: Halobacteriales (83.33%)
6 4153 bp 69.93 11.58 81.84
qh_1_scaffold_2898
Order: Halobacteriales (91.67%)
12 9212 bp 69.80 11.58 80.96
qh_1_scaffold_829
Order: Halobacteriales (90.91%)
11 10892 bp 68.88 11.51 90.70
qh_1_scaffold_8576
Species: Haloarcula californiae (71.43%)
7 5701 bp 70.92 11.51 96.40
qh_1_scaffold_12796
Order: Halobacteriales (75%)
4 3560 bp 72.13 11.49 90.51
qh_1_scaffold_5491
Order: Halobacteriales (71.43%)
7 3970 bp 62.29 11.46 86.15
qh_1_scaffold_10400
Order: Natrialbales (50%)
10 7687 bp 67.32 11.46 75.48
qh_1_scaffold_25467
Genus: Haloarcula (60%)
5 3250 bp 68.71 11.42 80.12
qh_1_scaffold_2497
Class: Halobacteria (71.43%)
7 5493 bp 70.49 11.41 92.68
qh_1_scaffold_2228
Order: Halobacteriales (50%)
6 4584 bp 70.66 11.39 91.69
qh_1_scaffold_7505
Order: Halobacteriales (66.67%)
3 3939 bp 67.63 11.37 92.31
qh_1_scaffold_9092
Species: Halosimplex carlsbadense (80%)
5 3954 bp 69.27 11.36 91.50
qh_1_scaffold_3547
Order: Halobacteriales (62.5%)
8 7066 bp 69.43 11.34 86.36
qh_1_scaffold_14739
Class: Halobacteria (50%)
6 3618 bp 74.71 11.33 98.26
qh_1_scaffold_9674
Order: Halobacteriales (60%)
5 3817 bp 69.66 11.32 94.94
qh_1_scaffold_5984
Order: Halobacteriales (50%)
6 4760 bp 70.67 11.30 83.26
qh_1_scaffold_15781
Class: Halobacteria (70%)
10 4539 bp 67.94 11.30 84.93
qh_1_scaffold_3642
Order: Halobacteriales (50%)
4 4677 bp 69.81 11.29 75.50
qh_1_scaffold_9098
Order: Halobacteriales (75%)
8 4613 bp 69.28 11.27 73.62
Displaying items 101-150 of 249 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.