ggKbase home page
Advanced Search
Search Help

QH_1_Viridiplantae_55_6

QH_1_Eukaryota_55_6
In projects: QH_1

Consensus taxonomy: Eukaryota

Taxonomy override: Eukaryote

Metagenomic Context

Parent: qh_1_UNK

Properties

Avg. coverage: 6.08 Longest contig: 4.44 Kbp Bin length: 1.79 Mbp GC content: 54.99 %
Contigs count: 1078 Features count: 1950 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 22 / 55 MC: 6 BSCG 14 / 51 MC: 3 ASCG 11 / 38 MC: 4
Displaying items 601-650 of 1078 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qh_1_scaffold_10984
Species: Bathycoccus prasinos (50%)
2 1721 bp 55.49 6.62 100.06
qh_1_scaffold_12597
Species: Micromonas sp. RCC299 (50%)
2 1563 bp 58.86 4.22 92.71
qh_1_scaffold_13749
Species: Erythranthe guttata (50%)
2 1470 bp 55.24 7.07 99.59
qh_1_scaffold_18588
Species: Micromonas sp. RCC299 (50%)
2 1182 bp 57.61 5.08 99.49
qh_1_scaffold_20912
Species: Volvox carteri (50%)
2 1713 bp 54.58 7.06 94.05
qh_1_scaffold_7979
Species: Ostreococcus 'lucimarinus' (50%)
2 2110 bp 53.89 6.54 58.72
qh_1_scaffold_15131
Species: Triticum urartu (50%)
2 1372 bp 53.35 4.96 71.28
qh_1_scaffold_19049
Species: Volvox carteri (50%)
2 2322 bp 54.44 7.24 60.08
qh_1_scaffold_20913
Species: Bathycoccus prasinos (50%)
2 1079 bp 58.94 5.65 90.64
qh_1_scaffold_22022
Species: Micromonas sp. RCC299 (50%)
2 1035 bp 52.27 5.70 72.75
qh_1_scaffold_7980
Species: Physcomitrella patens (50%)
2 2109 bp 55.81 5.22 50.36
qh_1_scaffold_13520
Species: Cucumis sativus (50%)
2 2190 bp 50.59 5.34 79.59
qh_1_scaffold_16516
Species: Tetraselmis sp. GSL018 (50%)
2 1291 bp 54.30 6.27 95.74
qh_1_scaffold_11448
Species: Chlorella variabilis (50%)
2 1673 bp 57.62 5.26 73.16
qh_1_scaffold_20916
Species: Micromonas sp. RCC299 (50%)
2 1079 bp 63.48 6.21 68.67
qh_1_scaffold_19975
Species: Volvox carteri (50%)
2 1117 bp 57.30 8.42 94.54
qh_1_scaffold_8675
Species: Volvox carteri (50%)
2 2005 bp 51.02 5.19 60.15
qh_1_scaffold_19285
Species: Gossypium arboreum (50%)
2 1148 bp 59.49 6.88 74.48
qh_1_scaffold_11220
Species: Selaginella moellendorffii (50%)
2 1695 bp 55.81 6.14 70.44
qh_1_scaffold_13756
Species: Tetraselmis sp. GSL018 (50%)
2 1470 bp 55.92 4.97 87.55
qh_1_scaffold_15369
Species: Ostreococcus tauri (50%)
2 1886 bp 49.79 5.36 59.49
qh_1_scaffold_15139
Species: Micromonas sp. RCC299 (50%)
2 1372 bp 57.51 6.34 79.59
qh_1_scaffold_16293
Species: Chara braunii (50%)
2 1304 bp 56.60 5.52 49.23
qh_1_scaffold_15372
Species: Physcomitrella patens (50%)
2 1357 bp 55.20 5.82 89.98
qh_1_scaffold_16524
Species: Leersia perrieri (50%)
2 1290 bp 55.50 6.98 80.00
qh_1_scaffold_22262
Species: Monoraphidium neglectum (50%)
2 1968 bp 54.12 6.00 52.74
qh_1_scaffold_33450
Species: Helicosporidium sp. ATCC 50920 (100%)
2 1307 bp 56.31 7.88 79.88
qh_1_scaffold_16065
Species: Chlamydomonas reinhardtii (50%)
2 1792 bp 58.76 5.92 102.96
qh_1_scaffold_9834
Species: Zea mays (50%)
2 1852 bp 56.32 5.40 49.24
qh_1_scaffold_18831
Species: Gossypium raimondii (50%)
2 1791 bp 57.90 5.70 82.91
qh_1_scaffold_9374
Species: Hordeum vulgare (50%)
2 1910 bp 57.02 5.71 96.13
qh_1_scaffold_12610
Species: Micromonas pusilla (50%)
2 1562 bp 56.27 4.29 70.49
qh_1_scaffold_16067
Species: Micromonas sp. RCC299 (50%)
2 1317 bp 56.04 7.97 92.94
qh_1_scaffold_12150
Species: Dolichomastix tenuilepis (50%)
2 1605 bp 59.88 5.30 91.03
qh_1_scaffold_13995
Species: Tetraselmis sp. GSL018 (50%)
2 1452 bp 53.03 6.27 89.26
qh_1_scaffold_16068
Species: Glycine max (50%)
2 1317 bp 60.06 7.44 97.27
qh_1_scaffold_16529
Species: Citrus sinensis (50%)
2 1290 bp 56.36 6.59 64.19
qh_1_scaffold_16990
Species: Micromonas pusilla (50%)
2 1264 bp 57.04 6.25 72.39
qh_1_scaffold_9376
Species: Ostreococcus tauri (50%)
2 1910 bp 51.41 4.71 84.82
qh_1_scaffold_14688
Species: Zea mays (50%)
2 2069 bp 52.97 5.07 56.11
qh_1_scaffold_19298
Species: Ostreococcus 'lucimarinus' (50%)
2 2161 bp 56.55 5.74 55.25
qh_1_scaffold_21394
Species: Tetraselmis sp. GSL018 (50%)
2 1060 bp 56.23 5.75 62.26
qh_1_scaffold_18147
Species: Monoraphidium neglectum (50%)
2 1730 bp 56.07 7.17 77.17
qh_1_scaffold_5696
Species: Tetraselmis sp. GSL018 (50%)
2 2599 bp 51.40 6.54 59.22
qh_1_scaffold_7308
Species: Musa acuminata (50%)
2 2229 bp 57.07 6.06 59.35
qh_1_scaffold_11928
Species: Brassica oleracea (50%)
2 2971 bp 54.22 7.20 42.31
qh_1_scaffold_13540
Species: Chlorella variabilis (50%)
2 1484 bp 56.87 8.29 90.16
qh_1_scaffold_13771
Species: Micromonas sp. RCC299 (50%)
2 2186 bp 56.08 5.86 86.32
qh_1_scaffold_17919
Species: Micromonas pusilla (50%)
2 1216 bp 57.98 7.65 40.71
qh_1_scaffold_23921
Species: Auxenochlorella protothecoides (100%)
2 1682 bp 56.54 7.67 100.06
Displaying items 601-650 of 1078 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.