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QH_1_Viridiplantae_55_6

QH_1_Eukaryota_55_6
In projects: QH_1

Consensus taxonomy: Eukaryota

Taxonomy override: Eukaryote

Metagenomic Context

Parent: qh_1_UNK

Properties

Avg. coverage: 6.08 Longest contig: 4.44 Kbp Bin length: 1.79 Mbp GC content: 54.99 %
Contigs count: 1078 Features count: 1950 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 22 / 55 MC: 6 BSCG 14 / 51 MC: 3 ASCG 11 / 38 MC: 4
Displaying items 151-200 of 1078 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qh_1_scaffold_8703
Species: Bathycoccus prasinos (100%)
2 2513 bp 55.51 6.76 38.44
qh_1_scaffold_10789
Species: Physcomitrella patens (50%)
2 1741 bp 60.43 5.97 90.64
qh_1_scaffold_14936
Species: Ostreococcus tauri (50%)
2 1384 bp 54.05 6.50 85.40
qh_1_scaffold_5479
Species: Chlorella variabilis (50%)
2 2668 bp 55.66 5.85 60.27
qh_1_scaffold_8012
Species: Amborella trichopoda (50%)
2 2104 bp 55.13 6.70 88.12
qh_1_scaffold_11481
Species: Medicago truncatula (50%)
2 1670 bp 54.19 9.76 31.26
qh_1_scaffold_14246
Species: Zea mays (50%)
2 1432 bp 55.73 5.94 75.21
qh_1_scaffold_14707
Species: Tetraselmis sp. GSL018 (50%)
2 1399 bp 51.61 6.00 66.26
qh_1_scaffold_20467
Species: Glycine soja (50%)
2 1096 bp 59.03 5.66 77.74
qh_1_scaffold_7325
Species: Ostreococcus 'lucimarinus' (50%)
2 2226 bp 56.33 6.11 86.52
qh_1_scaffold_14018
Species: Micromonas sp. RCC299 (50%)
2 1450 bp 54.21 6.62 81.93
qh_1_scaffold_14249
Species: Physcomitrella patens (50%)
2 1432 bp 53.91 4.89 75.21
qh_1_scaffold_12637
Species: Monoraphidium neglectum (50%)
2 1560 bp 52.95 6.67 54.81
qh_1_scaffold_17014
Species: Micromonas pusilla (50%)
2 1263 bp 57.40 5.38 63.18
qh_1_scaffold_18628
Species: Micromonas sp. RCC299 (50%)
2 1181 bp 60.03 5.59 93.23
qh_1_scaffold_5253
Species: Populus trichocarpa (50%)
2 2739 bp 54.65 5.48 57.28
qh_1_scaffold_11487
Species: Physcomitrella patens (50%)
2 2221 bp 54.07 6.39 90.91
qh_1_scaffold_11717
Species: Bathycoccus prasinos (50%)
2 2628 bp 54.53 6.32 87.90
qh_1_scaffold_16787
Species: Prunus persica (50%)
2 1276 bp 56.90 8.86 35.50
qh_1_scaffold_25068
Species: Tetraselmis sp. GSL018 (50%)
2 1572 bp 54.39 6.04 102.67
qh_1_scaffold_11949
Species: Tetraselmis sp. GSL018 (50%)
2 1624 bp 56.83 5.73 80.73
qh_1_scaffold_14021
Species: Physcomitrella patens (50%)
2 2316 bp 54.27 5.44 87.05
qh_1_scaffold_15175
Species: Bathycoccus prasinos (50%)
2 1370 bp 55.99 4.60 97.01
qh_1_scaffold_19784
Species: Nicotiana benthamiana (50%)
2 1125 bp 61.42 5.33 102.93
qh_1_scaffold_18632
Species: Chlamydomonas reinhardtii (50%)
2 1180 bp 54.24 6.95 73.47
qh_1_scaffold_22780
Species: Bathycoccus prasinos (50%)
2 1856 bp 53.02 5.82 40.89
qh_1_scaffold_12181
Species: Leersia perrieri (50%)
2 1602 bp 58.93 6.05 96.63
qh_1_scaffold_7563
Species: Ostreococcus 'lucimarinus' (50%)
2 2183 bp 55.61 5.63 85.48
qh_1_scaffold_8715
Species: Araucaria cunninghamii (50%)
2 1999 bp 52.68 7.35 47.42
qh_1_scaffold_8716
Species: Ostreococcus 'lucimarinus' (50%)
2 1999 bp 54.43 6.85 94.55
qh_1_scaffold_8948
Species: Coccomyxa subellipsoidea (50%)
2 1967 bp 50.94 6.86 85.41
qh_1_scaffold_12645
Species: Tetraselmis sp. GSL018 (50%)
2 1560 bp 58.53 7.76 71.73
qh_1_scaffold_18867
Species: Selaginella moellendorffii (50%)
2 1168 bp 50.26 5.57 66.52
qh_1_scaffold_20017
Species: Tetraselmis sp. GSL018 (50%)
2 1115 bp 60.54 6.55 99.01
qh_1_scaffold_6644
Species: Musa acuminata (50%)
2 2373 bp 57.40 6.03 94.44
qh_1_scaffold_6875
Species: Araucaria cunninghamii (50%)
2 3020 bp 53.94 6.13 76.79
qh_1_scaffold_10572
Species: Ostreococcus tauri (50%)
2 1766 bp 51.59 6.23 90.71
qh_1_scaffold_5724
Species: Setaria italica (50%)
2 2590 bp 53.82 6.29 44.36
qh_1_scaffold_14721
Species: Micromonas pusilla (50%)
2 2007 bp 55.41 6.53 32.74
qh_1_scaffold_8720
Species: Micromonas sp. RCC299 (50%)
2 1998 bp 53.50 6.36 98.20
qh_1_scaffold_16566
Species: Volvox carteri (50%)
2 1288 bp 55.43 6.52 80.82
qh_1_scaffold_8491
Species: Chlorella variabilis (50%)
2 2031 bp 51.40 6.15 65.58
qh_1_scaffold_17027
Species: Tetraselmis sp. GSL018 (50%)
2 1262 bp 57.53 3.88 100.08
qh_1_scaffold_21427
Species: Amborella trichopoda (50%)
2 2126 bp 54.70 5.97 90.73
qh_1_scaffold_14032
Species: Physcomitrella patens (50%)
2 2235 bp 50.25 6.00 64.03
qh_1_scaffold_14263
Species: Coccomyxa subellipsoidea (50%)
2 1431 bp 53.46 5.24 45.70
qh_1_scaffold_11038
Species: Micromonas sp. RCC299 (100%)
2 2333 bp 53.88 6.69 101.59
qh_1_scaffold_6881
Species: Ostreococcus tauri (50%)
2 3213 bp 63.80 11.61 87.49
qh_1_scaffold_15187
Species: Coccomyxa subellipsoidea (50%)
2 1369 bp 48.58 5.99 97.95
qh_1_scaffold_22538
Species: Physcomitrella patens (50%)
2 1017 bp 56.44 6.39 92.04
Displaying items 151-200 of 1078 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.