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QH_1_Viridiplantae_55_6

QH_1_Eukaryota_55_6
In projects: QH_1

Consensus taxonomy: Eukaryota

Taxonomy override: Eukaryote

Metagenomic Context

Parent: qh_1_UNK

Properties

Avg. coverage: 6.08 Longest contig: 4.44 Kbp Bin length: 1.79 Mbp GC content: 54.99 %
Contigs count: 1078 Features count: 1950 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 22 / 55 MC: 6 BSCG 14 / 51 MC: 3 ASCG 11 / 38 MC: 4
Displaying items 251-300 of 1078 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qh_1_scaffold_14752
Species: Micromonas sp. RCC299 (50%)
2 1397 bp 54.33 6.37 77.09
qh_1_scaffold_14983
Species: Physcomitrella patens (50%)
2 1382 bp 61.14 6.08 52.97
qh_1_scaffold_5525
Species: Micromonas sp. RCC299 (50%)
2 2654 bp 57.27 5.58 99.25
qh_1_scaffold_13600
Species: Micromonas sp. RCC299 (50%)
2 1480 bp 55.41 4.39 37.09
qh_1_scaffold_20996
Species: Chlorokybus atmophyticus (50%)
2 1075 bp 59.53 4.56 92.37
qh_1_scaffold_22818
Species: Ostreococcus tauri (100%)
2 1006 bp 56.16 5.17 52.49
qh_1_scaffold_15676
Species: Ostreococcus 'lucimarinus' (50%)
2 1909 bp 56.31 6.08 50.92
qh_1_scaffold_10838
Species: Bathycoccus prasinos (50%)
2 1735 bp 51.87 7.15 47.03
qh_1_scaffold_18211
Species: Micromonas pusilla (50%)
2 1200 bp 57.33 5.67 91.25
qh_1_scaffold_21690
Species: Micromonas sp. RCC299 (50%)
2 1048 bp 55.34 6.11 54.39
qh_1_scaffold_11761
Species: Micromonas sp. RCC299 (50%)
2 1643 bp 52.59 6.94 90.38
qh_1_scaffold_12221
Species: Coccomyxa subellipsoidea (50%)
2 2629 bp 53.25 5.55 71.21
qh_1_scaffold_19365
Species: Morus notabilis (50%)
2 1145 bp 52.58 6.99 31.70
qh_1_scaffold_36903
Species: Monoraphidium neglectum (50%)
2 1254 bp 53.43 5.18 104.55
qh_1_scaffold_13144
Species: Coffea canephora (50%)
2 2381 bp 52.83 6.34 43.47
qh_1_scaffold_20748
Species: Micromonas sp. RCC299 (50%)
2 1085 bp 54.19 6.18 79.08
qh_1_scaffold_8065
Species: Hordeum vulgare (50%)
2 2095 bp 53.17 5.68 91.22
qh_1_scaffold_19598
Species: Bathycoccus prasinos (50%)
2 1133 bp 55.87 4.77 91.88
qh_1_scaffold_14990
Species: Glycine max (50%)
2 1381 bp 52.86 6.01 98.41
qh_1_scaffold_33912
Species: Physcomitrella patens (50%)
2 1328 bp 52.71 5.57 75.68
qh_1_scaffold_7606
Species: Auxenochlorella protothecoides (50%)
2 2175 bp 54.07 5.98 55.45
qh_1_scaffold_11303
Species: Brassica napus (50%)
2 1688 bp 57.29 6.52 86.02
qh_1_scaffold_13147
Species: Physcomitrella patens (50%)
2 1516 bp 55.54 6.33 69.66
qh_1_scaffold_15682
Species: Tetraselmis sp. GSL018 (50%)
2 1338 bp 59.64 6.73 45.29
qh_1_scaffold_5072
Species: Tetraselmis sp. GSL018 (50%)
2 2798 bp 58.61 6.36 73.87
qh_1_scaffold_6686
Species: Citrus clementina (50%)
2 2364 bp 53.89 6.26 72.34
qh_1_scaffold_20290
Species: Tetraselmis sp. GSL018 (50%)
2 1623 bp 58.29 6.90 84.10
qh_1_scaffold_5997
Species: Volvox carteri (50%)
2 2521 bp 54.46 5.63 71.04
qh_1_scaffold_16145
Species: Ostreococcus 'lucimarinus' (50%)
2 1312 bp 57.77 6.17 74.09
qh_1_scaffold_36970
Species: Auxenochlorella protothecoides (50%)
2 1306 bp 50.38 6.20 51.00
qh_1_scaffold_8995
Species: Ostreococcus 'lucimarinus' (50%)
2 2875 bp 56.07 7.69 75.97
qh_1_scaffold_21239
Species: Araucaria cunninghamii (50%)
2 1066 bp 58.16 5.53 100.19
qh_1_scaffold_33967
Species: Micromonas sp. RCC299 (50%)
2 1362 bp 58.08 6.39 86.34
qh_1_scaffold_18453
Species: Amborella trichopoda (50%)
2 1189 bp 53.66 7.32 95.12
qh_1_scaffold_22600
Species: Chlorella variabilis (50%)
2 1014 bp 55.72 5.03 89.65
qh_1_scaffold_7613
Species: Ostreococcus 'lucimarinus' (50%)
2 2175 bp 56.09 6.21 86.34
qh_1_scaffold_10850
Species: Chlorella variabilis (50%)
2 1734 bp 53.23 6.34 97.75
qh_1_scaffold_22349
Species: Chlamydomonas reinhardtii (50%)
2 1023 bp 53.18 5.67 37.24
qh_1_scaffold_11542
Species: Physcomitrella patens (50%)
2 1664 bp 54.69 6.13 99.70
qh_1_scaffold_15691
Species: Ostreococcus tauri (50%)
2 1914 bp 55.75 5.33 46.39
qh_1_scaffold_22581
Species: Micromonas pusilla (50%)
2 1015 bp 59.41 6.80 83.65
qh_1_scaffold_28616
Species: Coccomyxa subellipsoidea (50%)
2 1398 bp 53.58 5.72 72.10
qh_1_scaffold_8307
Species: Physcomitrella patens (50%)
2 2060 bp 55.24 6.55 94.37
qh_1_scaffold_24252
Species: Ostreococcus tauri (50%)
2 1459 bp 53.80 5.48 103.63
qh_1_scaffold_12928
Species: Tetraselmis sp. GSL018 (50%)
2 1534 bp 59.58 4.56 76.66
qh_1_scaffold_12699
Species: Monoraphidium neglectum (50%)
2 1554 bp 55.53 6.44 40.93
qh_1_scaffold_26393
Species: Coccomyxa subellipsoidea (50%)
2 1684 bp 52.91 6.18 66.09
qh_1_scaffold_24266
Species: Micromonas sp. RCC299 (50%)
2 1873 bp 57.50 6.25 54.30
qh_1_scaffold_16387
Species: Ostreococcus 'lucimarinus' (50%)
2 1298 bp 54.08 4.47 98.69
qh_1_scaffold_19382
Species: Medicago truncatula (50%)
2 1144 bp 53.67 6.21 69.49
Displaying items 251-300 of 1078 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.