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QH_2_UNK

In projects: QH_2  |  diaphorachaeota

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 20.77 Longest contig: 62.94 Kbp Bin length: 51.65 Mbp GC content: 61.28 %
Contigs count: 21073 Features count: 67835 rRNAs count: 15 tRNAs count: 624

Genome completeness

megabin RP 54 / 55 MC: 47 BSCG 45 / 51 MC: 42 ASCG 38 / 38 MC: 38
Displaying items 201-250 of 21073 in total
contig # features sequence size GC content (%) Cov Coding Density (%) notes
qh_2_scaffold_14869
Species: Rubrobacter radiotolerans (50%)
2 1426 bp 57.64 4.49 47.55
qh_2_scaffold_24252
Species: Phycisphaera mikurensis (100%)
1 1003 bp 59.12 4.49 99.90
qh_2_scaffold_18889
Order: Halobacteriales (66.67%)
3 1203 bp 54.11 4.49 102.74
qh_2_scaffold_20532 2 1134 bp 47.27 4.50 95.77
qh_2_scaffold_20226 3 1935 bp 50.96 4.50 82.17
qh_2_scaffold_23665
Species: Halorubrum lacusprofundi (100%)
2 1021 bp 47.60 4.51 100.20
qh_2_scaffold_23667 2 1021 bp 46.82 4.51 84.92
qh_2_scaffold_15695
Class: Halobacteria (66.67%)
3 1375 bp 45.60 4.51 84.65
qh_2_scaffold_19013
Domain: Bacteria (66.67%)
3 1198 bp 30.72 4.51 95.83
qh_2_scaffold_21176
Species: Methanobrevibacter ruminantium (50%)
2 1109 bp 45.63 4.51 84.67
qh_2_scaffold_19109
Species: Halococcus thailandensis (50%)
2 1194 bp 38.19 4.52 99.75
qh_2_scaffold_14125 1 1481 bp 47.13 4.52 55.10
qh_2_scaffold_29434
Species: Hymenobacter swuensis (100%)
2 1373 bp 54.33 4.52 100.51
qh_2_scaffold_16521 3 1326 bp 47.06 4.52 82.13
qh_2_scaffold_21854 2 1083 bp 51.52 4.52 91.14
qh_2_scaffold_36996 3 1151 bp 42.22 4.52 107.91
qh_2_scaffold_41622 3 1882 bp 44.69 4.52 54.99
qh_2_scaffold_34840 3 1261 bp 51.07 4.52 93.50
qh_2_scaffold_2999
Species: Cyclobacteriaceae bacterium AK24 (50%)
2 3780 bp 38.99 4.52 99.76
qh_2_scaffold_9859 4 1875 bp 41.87 4.53 72.96
qh_2_scaffold_23199
Species: Glaciecola nitratireducens (100%)
1 1037 bp 48.79 4.53 88.52
qh_2_scaffold_14138
Species: Oscillatoria nigro-viridis (100%)
1 1480 bp 44.12 4.53 99.93
qh_2_scaffold_19169 3 1191 bp 61.71 4.53 40.55
qh_2_scaffold_21337 1 1102 bp 38.57 4.54 87.66
qh_2_scaffold_19218 2 1189 bp 51.14 4.54 100.17
qh_2_scaffold_19701
Species: Gloeocapsa sp. PCC 73106 (50%)
2 1167 bp 50.21 4.54 59.38
qh_2_scaffold_20230
Species: Pseudoalteromonas luteoviolacea (50%)
2 1146 bp 46.77 4.54 67.02
qh_2_scaffold_21942 2 1079 bp 57.09 4.54 53.10
qh_2_scaffold_13376 2 1537 bp 52.77 4.55 85.69
qh_2_scaffold_22630
Species: Haloquadratum walsbyi (50%)
2 1056 bp 51.89 4.55 99.43
qh_2_scaffold_23333
Species: Salinarchaeum sp. Harcht-Bsk1 (50%)
2 1032 bp 56.69 4.55 100.58
qh_2_scaffold_37663
Species: Haloquadratum walsbyi (100%)
2 1271 bp 48.07 4.56 101.26
qh_2_scaffold_17934
Species: Halorubrum sp. AJ67 (50%)
2 1250 bp 44.96 4.56 81.36
qh_2_scaffold_17086
Species: Halobiforma lacisalsi (50%)
2 1294 bp 55.18 4.56 100.16
qh_2_scaffold_14933 5 1422 bp 52.88 4.57 93.25
qh_2_scaffold_22707
Species: Natronococcus occultus (50%)
2 1621 bp 44.36 4.57 90.87
qh_2_scaffold_19377 2 1181 bp 50.97 4.57 56.14
qh_2_scaffold_24149 4 1007 bp 59.88 4.57 88.78
qh_2_scaffold_22130 3 1073 bp 47.25 4.57 92.26
qh_2_scaffold_14334
Species: Haloarcula vallismortis (50%)
2 1464 bp 46.38 4.58 59.63
qh_2_scaffold_13500 2 1527 bp 46.82 4.58 43.42
qh_2_scaffold_22267 1 1069 bp 53.79 4.58 99.91
qh_2_scaffold_19411 3 1180 bp 54.66 4.58 64.07
qh_2_scaffold_44871 2 1070 bp 46.07 4.58 71.50
qh_2_scaffold_27063
Species: Halorhabdus utahensis (100%)
1 1613 bp 44.95 4.59 99.88
qh_2_scaffold_24298
Species: Natrialba asiatica (50%)
2 1001 bp 56.14 4.60 98.60
qh_2_scaffold_10484
Genus: Haloferax (50%)
4 2372 bp 51.73 4.60 94.73
qh_2_scaffold_13039 3 1564 bp 57.93 4.60 97.83
qh_2_scaffold_22334 2 1066 bp 63.04 4.60 95.40
qh_2_scaffold_31982
Class: Halobacteria (100%)
3 1412 bp 46.18 4.60 87.54
Displaying items 201-250 of 21073 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.