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QH_2_Halobacteriales_66_30

In projects: QH_2  |  diaphorachaeota  |  archaea_ggkbase

Consensus taxonomy: Halobacteriales  →  Halobacteria  →  Euryarchaeota  →  Archaea

Taxonomy override: Euryarchaeota

Metagenomic Context

Parent: QH_2_UNK

Properties

Avg. coverage: 30.20 Longest contig: 22.91 Kbp Bin length: 1.49 Mbp GC content: 66.33 %
Contigs count: 208 Features count: 1703 rRNAs count: 0 tRNAs count: 24

Genome completeness

partial RP 14 / 55 MC: 2 BSCG 14 / 51 MC: 3 ASCG 28 / 38
Displaying items 151-200 of 208 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qh_2_scaffold_3916
Order: Halobacteriales (71.43%)
7 5558 bp 65.82 32.85 84.47
qh_2_scaffold_12631
Order: Halobacteriales (50%)
4 3530 bp 67.45 32.86 83.46
qh_2_scaffold_560
Order: Halobacteriales (80%)
10 10618 bp 67.85 33.04 90.84
qh_2_scaffold_4618
Order: Halobacteriales (77.78%)
9 7665 bp 66.82 33.19 87.44
qh_2_scaffold_2266
Order: Halobacteriales (50%)
10 10087 bp 65.12 33.23 84.26
qh_2_scaffold_6143
Order: Halobacteriales (60%)
10 6281 bp 67.44 33.39 83.25
qh_2_scaffold_3198
Order: Halobacteriales (57.14%)
7 6051 bp 66.73 33.40 84.58
qh_2_scaffold_194
Order: Halobacteriales (73.68%)
19 19420 bp 67.91 33.52 80.92
qh_2_scaffold_2616
Order: Halobacteriales (50%)
16 15603 bp 67.62 33.54 77.08
qh_2_scaffold_12827
Class: Halobacteria (60%)
5 3657 bp 68.83 33.61 90.65
qh_2_scaffold_4996
Order: Halobacteriales (50%)
6 5482 bp 66.25 33.62 86.03
qh_2_scaffold_3484
Order: Halobacteriales (57.14%)
7 5255 bp 65.88 33.64 86.43
qh_2_scaffold_9655
Order: Halobacteriales (80%)
5 5462 bp 63.42 33.69 83.49
qh_2_scaffold_10876
Order: Halobacteriales (60%)
5 3449 bp 67.58 33.72 85.24
qh_2_scaffold_1869
Order: Halobacteriales (63.64%)
11 7926 bp 69.03 34.03 85.05
qh_2_scaffold_1589
Order: Halobacteriales (80%)
5 5328 bp 66.80 34.07 89.25
qh_2_scaffold_2480
Order: Halobacteriales (50%)
8 11728 bp 65.45 34.19 91.42
qh_2_scaffold_1831
Order: Halobacteriales (77.78%)
9 5611 bp 68.85 34.27 83.94
qh_2_scaffold_388
Class: Halobacteria (73.91%)
23 19796 bp 67.85 34.29 81.43
qh_2_scaffold_2296
Order: Halobacteriales (69.23%)
13 8480 bp 68.17 34.30 82.08
qh_2_scaffold_5791
Order: Halobacteriales (71.43%)
7 5438 bp 66.68 34.30 87.27
qh_2_scaffold_880
Order: Halobacteriales (75%)
12 10538 bp 68.46 34.35 90.64
qh_2_scaffold_1141
Order: Halobacteriales (55.56%)
9 9116 bp 68.06 34.69 87.97
qh_2_scaffold_2883
Order: Halobacteriales (69.57%)
23 13096 bp 66.50 34.70 93.05
qh_2_scaffold_6025
Order: Halobacteriales (50%)
8 8967 bp 66.22 34.82 85.67
qh_2_scaffold_8616
Class: Halobacteria (75%)
8 4566 bp 65.75 34.82 66.82
qh_2_scaffold_8404
Class: Halobacteria (80%)
5 3074 bp 67.79 34.94 84.22
qh_2_scaffold_13231
Order: Halobacteriales (50%)
6 4091 bp 69.84 35.25 92.84
qh_2_scaffold_2348
Order: Halobacteriales (54.55%)
11 11101 bp 69.21 35.38 85.64
qh_2_scaffold_1489
Class: Halobacteria (85.71%)
7 6337 bp 68.57 35.44 86.59
qh_2_scaffold_3879
Order: Halobacteriales (50%)
8 7218 bp 66.00 35.47 69.49
qh_2_scaffold_2075
Order: Halobacteriales (60%)
5 4640 bp 63.88 35.50 92.91
qh_2_scaffold_4248
Class: Halobacteria (66.67%)
3 3123 bp 68.11 35.61 95.20
qh_2_scaffold_2733
Order: Halobacteriales (62.5%)
8 4924 bp 64.36 35.62 75.55
qh_2_scaffold_4256
Order: Halobacteriales (70%)
10 6827 bp 64.46 35.65 78.48
qh_2_scaffold_937
Order: Halobacteriales (60%)
10 7939 bp 66.90 35.68 88.61
qh_2_scaffold_4179
Order: Halobacteriales (54.55%)
11 10001 bp 65.73 35.97 70.37
qh_2_scaffold_2478
Order: Halobacteriales (75%)
8 10742 bp 67.19 36.08 77.42
qh_2_scaffold_7649
Order: Halobacteriales (80%)
5 4546 bp 67.09 36.12 64.01
qh_2_scaffold_2251
Order: Halobacteriales (69.23%)
13 8349 bp 69.00 36.26 86.63
qh_2_scaffold_3974
Order: Halobacteriales (80%)
5 4930 bp 62.68 36.27 76.73
qh_2_scaffold_3302
Class: Halobacteria (75%)
8 5641 bp 67.12 36.27 75.25
qh_2_scaffold_2607
Order: Halobacteriales (60%)
5 4080 bp 68.92 36.30 85.81
qh_2_scaffold_4497
Class: Halobacteria (50%)
4 3032 bp 68.30 36.31 88.65
qh_2_scaffold_2856
Order: Halobacteriales (50%)
6 7618 bp 68.25 36.45 89.71
qh_2_scaffold_1133
Class: Halobacteria (75%)
8 6351 bp 67.89 36.56 91.54
qh_2_scaffold_5060
Species: halophilic archaeon J07HX64 (50%)
4 3260 bp 70.28 36.84 90.64
qh_2_scaffold_824
Order: Halobacteriales (50%)
8 7612 bp 64.07 37.01 86.00
qh_2_scaffold_1319
Order: Halobacteriales (90%)
10 8896 bp 63.60 37.06 91.76
qh_2_scaffold_12788
Order: Halobacteriales (80%)
5 4301 bp 67.71 37.13 66.26
Displaying items 151-200 of 208 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.