ggKbase | organisms

Advanced Search

QH_2_Oscillatoriophycideae_48_84

In projects: QH_2

Consensus taxonomy: Oscillatoriophycideae → Cyanobacteria → Bacteria

Taxonomy override: Cyanobacteria

Metagenomic Context

Parent: QH_2_UNK

Properties

Avg. coverage: 83.92 Longest contig: 92.31 Kbp Bin length: 3.73 Mbp GC content: 48.03 %

Contigs count: 259 Features count: 3634 rRNAs count: 1 tRNAs count: 41

Genome completeness

near complete RP 49 / 55 MC: 2 BSCG 50 / 51 MC: 1 ASCG 11 / 38

Displaying items 251-260 of 260 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
qh_2_scaffold_2787 Order: Oscillatoriales (100%)	3	3946 bp	46.63	83.15	72.83
qh_2_scaffold_866 Species: Halothece sp. PCC 7418 (66.67%)	3	7401 bp	51.30	80.92	86.62
qh_2_scaffold_2596 Class: Oscillatoriophycideae (66.67%)	3	5752 bp	44.12	90.09	48.50
qh_2_scaffold_4602 Species: Rubidibacter lacunae (50%)	2	3902 bp	43.31	107.10	43.05
qh_2_scaffold_3401 Species: Microcoleus sp. PCC 7113 (50%)	2	3535 bp	44.44	85.66	67.38
qh_2_scaffold_8580 Species: Gloeocapsa sp. PCC 7428 (50%)	2	3633 bp	49.93	69.20	98.51
qh_2_scaffold_2870 Species: Gloeocapsa sp. PCC 7428 (100%)	2	4229 bp	50.06	23.67	96.19
qh_2_scaffold_3732 Species: Pleurocapsa minor (50%)	2	3363 bp	46.65	82.63	57.18
qh_2_scaffold_5449 Species: Nostoc sp. PCC 7524 (50%)	2	3088 bp	52.17	50.32	94.62
qh_2_scaffold_4034 Species: Halothece sp. PCC 7418 (100%)	1	3218 bp	49.50	85.55	81.39

Displaying items 251-260 of 260 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

ggKBase is a service designed to assist in analyzing and integrating *omic data (e.g. metagenomics, proteomics, etc). The source code for ggKBase will be made available as an open source project.
You are encouraged to contact the development staff with issues related to usage of ggKBase. The ggKBase development staff as well as the members of the Banfield lab at the University of California, Berkeley, are not available to support outside research/computation requests.
We aim to make ggKBase the best resource possible and to make it accurate and available at all times; however, we cannot guarantee the correctness of any results, validity or integrity of the data, or the availability of the service: We cannot be held responsible for decisions made, losses suffered, or damages that resulted from using data from ggKBase.
We respect our user’s privacy and will not share any user registration details with anyone other than the ggKBase developers.
ggKBase is a social web site – it has mechanisms to share results and comments with other users of the system. As a registered user of ggKBase, you agree to respect the rights of other users and conduct yourself in a professional manner with courtesy and collegiality towards your fellow users. We reserve the right to delete users found not upholding these standards.
We reserve the right to reject inappropriate data submissions. As a User, you agree not to submit data that is not your own and you agree that any data you do submit is being submitted specifically for the purposes of analyzing using ggKBase.
ggKBase and its underlying servers and systems are properly administrated and backed up. However, ggKBase is not responsible for data loss or work loss as a result of system or hardware failures or criminal activity.
We reserve the right to perform additional data analysis to improve ggKBase, and we will not release user-contributed data without consent of the user.
Users of ggKBase are expected to properly cite any published work.
We reserve the right at any time to modify the Terms of Service for ggKBase. Modifications to these Terms will be effective immediately and we will make a reasonable effort to contact users via email of any changes. If you continue using ggKBase after an amendment to the Terms of Service, we assume you have read and accepted the changes.