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QH_2_Viridiplantae_55_6

QH_2_Eukaryota_55_6
In projects: QH_2

Consensus taxonomy: Eukaryota

Taxonomy override: Eukaryote

Metagenomic Context

Parent: QH_2_UNK

Properties

Avg. coverage: 6.42 Longest contig: 8.12 Kbp Bin length: 2.37 Mbp GC content: 54.91 %
Contigs count: 1189 Features count: 2456 rRNAs count: 0 tRNAs count: 1

Genome completeness

partial RP 18 / 55 MC: 7 BSCG 12 / 51 MC: 1 ASCG 16 / 38 MC: 2
Displaying items 1151-1189 of 1189 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qh_2_scaffold_26473
Species: Oryza punctata (50%)
2 1871 bp 59.17 6.20 100.05
qh_2_scaffold_20178
Species: Ricinus communis (50%)
2 1900 bp 67.00 7.79 100.11
qh_2_scaffold_24577
Species: Chlorella variabilis (100%)
2 1768 bp 55.60 7.52 100.11
qh_2_scaffold_15608
Species: Physcomitrella patens (50%)
2 2232 bp 54.61 6.59 100.13
qh_2_scaffold_17394
Species: Micromonas sp. RCC299 (50%)
2 1279 bp 59.11 6.80 100.16
qh_2_scaffold_1975
Species: Hordeum vulgare (50%)
2 5786 bp 51.18 6.10 100.38
qh_2_scaffold_14795
Species: Brassica napus (50%)
2 1431 bp 52.76 7.55 100.42
qh_2_scaffold_7145
Species: Tetraselmis sp. GSL018 (50%)
2 3910 bp 52.63 5.96 100.44
qh_2_scaffold_19696
Species: Eucalyptus grandis (50%)
2 1167 bp 61.27 5.74 100.51
qh_2_scaffold_16860
Species: Micromonas pusilla (50%)
2 1307 bp 47.21 8.65 100.54
qh_2_scaffold_28958
Species: Coccomyxa subellipsoidea (50%)
2 1399 bp 62.40 7.58 100.57
qh_2_scaffold_21092
Species: Ostreococcus 'lucimarinus' (50%)
2 1112 bp 57.28 6.03 100.63
qh_2_scaffold_13313
Phylum: Chlorophyta (50%)
4 2596 bp 55.89 6.05 100.89
qh_2_scaffold_8353
Species: Eucalyptus grandis (50%)
2 2081 bp 51.42 5.91 100.91
qh_2_scaffold_17752
Species: Gossypium raimondii (50%)
2 1260 bp 55.79 5.08 100.95
qh_2_scaffold_4989
Species: Chlamydomonas reinhardtii (50%)
2 2839 bp 53.29 5.74 101.02
qh_2_scaffold_16688
Species: Tetraselmis sp. GSL018 (50%)
2 3257 bp 54.25 5.86 101.04
qh_2_scaffold_12865
Species: Physcomitrella patens (50%)
2 3618 bp 51.88 6.03 101.16
qh_2_scaffold_11366
Species: Ostreococcus 'lucimarinus' (50%)
2 2249 bp 55.54 8.00 101.25
qh_2_scaffold_25665
Species: Arabidopsis lyrata (50%)
2 1490 bp 62.55 5.84 101.28
qh_2_scaffold_5612
Species: Micromonas sp. RCC299 (50%)
2 2650 bp 52.79 6.49 101.43
qh_2_scaffold_15122
Species: Erythranthe guttata (50%)
2 2767 bp 52.22 6.04 101.59
qh_2_scaffold_25008
Species: Coccomyxa subellipsoidea (50%)
2 1878 bp 52.50 6.44 101.60
qh_2_scaffold_19643
Species: Selaginella moellendorffii (50%)
2 2155 bp 56.15 6.45 101.62
qh_2_scaffold_15420
Phylum: Chlorophyta (60%)
5 2394 bp 53.09 5.64 101.75
qh_2_scaffold_8526
Species: Tetraselmis sp. GSL018 (50%)
2 2957 bp 54.58 6.36 101.76
qh_2_scaffold_45000
Species: Micromonas sp. RCC299 (50%)
2 1094 bp 55.12 6.76 102.01
qh_2_scaffold_11451
Species: Zea mays (50%)
2 1705 bp 55.43 6.74 102.05
qh_2_scaffold_36368
Species: Physcomitrella patens (50%)
2 1284 bp 56.15 6.46 102.10
qh_2_scaffold_19243
Species: Chlamydomonas reinhardtii (100%)
2 2100 bp 51.43 6.14 102.14
qh_2_scaffold_3216
Domain: Viridiplantae (50%)
4 3640 bp 58.35 7.01 102.20
qh_2_scaffold_14283
Species: Volvox carteri (50%)
2 1467 bp 54.67 7.29 102.25
qh_2_scaffold_26786
Species: Bathycoccus prasinos (50%)
2 1512 bp 60.85 6.68 102.98
qh_2_scaffold_15909
Species: Oryza glaberrima (50%)
2 1361 bp 62.67 6.32 104.04
qh_2_scaffold_20234
Species: Sorghum bicolor (50%)
2 1717 bp 58.30 4.72 105.01
qh_2_scaffold_18250
Species: Chlamydomonas reinhardtii (50%)
2 1697 bp 54.51 5.72 105.01
qh_2_scaffold_27515
Domain: Viridiplantae (66.67%)
3 1628 bp 58.85 6.27 106.33
qh_2_scaffold_12974
Species: Tetraselmis sp. GSL018 (50%)
2 1568 bp 58.16 6.82 106.38
qh_2_scaffold_6418
Phylum: Chlorophyta (80%)
5 2452 bp 53.51 5.67 108.52
Displaying items 1151-1189 of 1189 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.