ggKbase home page
Advanced Search
Search Help

QH_6_UNK

In projects: QH_6  |  diaphorachaeota

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 21.84 Longest contig: 86.52 Kbp Bin length: 43.49 Mbp GC content: 61.40 %
Contigs count: 17572 Features count: 56719 rRNAs count: 11 tRNAs count: 537

Genome completeness

megabin RP 45 / 55 MC: 35 BSCG 42 / 51 MC: 35 ASCG 38 / 38 MC: 38
Displaying items 17001-17050 of 17572 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qh_6_scaffold_15157
Species: Haloferax sulfurifontis (50%)
2 1388 bp 69.81 11.38 100.07
qh_6_scaffold_15252
Species: Natronomonas moolapensis (50%)
2 1382 bp 68.52 47.18 100.07
qh_6_scaffold_15812
Species: Salinarchaeum sp. Harcht-Bsk1 (50%)
2 1346 bp 72.59 51.93 100.07
qh_6_scaffold_15897
Species: Natrialba asiatica (50%)
2 1340 bp 74.78 74.93 100.08
qh_6_scaffold_15901
Species: halophilic archaeon J07HX64 (100%)
2 1340 bp 66.34 9.78 100.08
qh_6_scaffold_11776
Species: Paenibacillus curdlanolyticus (100%)
2 2662 bp 54.24 7.55 100.08
qh_6_scaffold_28141
Species: halophilic archaeon J07HX64 (50%)
2 1301 bp 69.10 9.84 100.08
qh_6_scaffold_16732
Species: Halonotius sp. J07HN4 (50%)
2 1289 bp 62.99 13.19 100.08
qh_6_scaffold_5805
Species: Haloferax mediterranei (50%)
2 2560 bp 53.75 6.84 100.08
qh_6_scaffold_14548
Species: Rhodothermus marinus (75%)
4 2536 bp 63.05 9.46 100.08
qh_6_scaffold_17441
Species: Natronococcus amylolyticus (50%)
2 1247 bp 60.95 19.17 100.08
qh_6_scaffold_33969
Species: Halomicrobium mukohataei (50%)
2 1244 bp 71.86 25.32 100.08
qh_6_scaffold_6263
Species: Haloterrigena turkmenica (50%)
2 2443 bp 67.34 53.62 100.08
qh_6_scaffold_18440
Species: Halococcus salifodinae (50%)
2 1193 bp 54.57 9.89 100.08
qh_6_scaffold_18443
Species: halophilic archaeon J07HX5 (100%)
2 1193 bp 63.87 9.05 100.08
qh_6_scaffold_18723
Species: halophilic archaeon DL31 (50%)
2 1178 bp 62.56 11.38 100.09
qh_6_scaffold_12663
Species: Halosimplex carlsbadense (100%)
2 2350 bp 71.15 20.38 100.09
qh_6_scaffold_18789
Species: RBG_13_Chloroflexi_51_36_curated (50%)
2 1175 bp 61.53 5.53 100.09
qh_6_scaffold_19023
Species: Halosimplex carlsbadense (50%)
2 1163 bp 65.61 15.91 100.09
qh_6_scaffold_4848
Order: Natrialbales (66.67%)
3 4622 bp 62.92 21.42 100.09
qh_6_scaffold_19803
Species: Haloferax sulfurifontis (50%)
2 1124 bp 60.68 13.52 100.09
qh_6_scaffold_19887
Species: Natrialba asiatica (50%)
2 1121 bp 50.76 4.82 100.09
qh_6_scaffold_20060
Species: uncultured archaeon A07HB70 (50%)
2 1112 bp 69.51 8.45 100.09
qh_6_scaffold_7390
Species: Haloferax sp. ATCC BAA-646 (100%)
3 2224 bp 51.89 8.09 100.09
qh_6_scaffold_20269
Species: Caldilinea aerophila (50%)
2 1103 bp 52.04 5.35 100.09
qh_6_scaffold_7542
Species: Crinalium epipsammum (50%)
2 2200 bp 48.36 6.45 100.09
qh_6_scaffold_7661
Species: Halorubrum saccharovorum (50%)
2 2179 bp 72.37 53.37 100.09
qh_6_scaffold_12483 2 2176 bp 66.04 11.99 100.09
qh_6_scaffold_20722
Species: Halosimplex carlsbadense (100%)
2 1082 bp 71.63 12.11 100.09
qh_6_scaffold_21290
Species: Natrialba hulunbeirensis (50%)
2 1058 bp 68.53 13.89 100.10
qh_6_scaffold_21369 2 1055 bp 63.41 13.46 100.10
qh_6_scaffold_21424
Species: Natronomonas pharaonis (50%)
2 1052 bp 68.06 76.71 100.10
qh_6_scaffold_8217 2 2086 bp 47.08 6.76 100.10
qh_6_scaffold_21691
Species: Natronomonas pharaonis (100%)
2 1043 bp 70.09 42.95 100.10
qh_6_scaffold_21817
Species: Candidatus Halobonum tyrrellensis (50%)
2 1037 bp 66.35 11.48 100.10
qh_6_scaffold_21822
Species: Natronorubrum bangense (50%)
2 1037 bp 70.49 24.11 100.10
qh_6_scaffold_8332
Species: Natronomonas pharaonis (50%)
2 2068 bp 75.53 39.56 100.10
qh_6_scaffold_8352
Species: halophilic archaeon J07HB67 (50%)
2 2065 bp 65.52 34.53 100.10
qh_6_scaffold_4217
Order: Halobacteriales (66.67%)
3 3063 bp 63.57 20.80 100.10
qh_6_scaffold_22309
Species: Natronomonas moolapensis (100%)
2 1016 bp 75.49 18.31 100.10
qh_6_scaffold_8582
Species: Candidatus Halobonum tyrrellensis (50%)
2 2032 bp 51.53 12.99 100.10
qh_6_scaffold_22670
Species: Halopiger xanaduensis (50%)
2 1001 bp 66.73 8.39 100.10
qh_6_scaffold_4440 9 2982 bp 62.51 27.43 100.10
qh_6_scaffold_4442
Species: Halorhabdus utahensis (100%)
2 2982 bp 65.76 13.48 100.10
qh_6_scaffold_13386
Species: Natronomonas pharaonis (100%)
2 1987 bp 69.15 11.12 100.10
qh_6_scaffold_9246
Species: Methanobacterium formicicum (50%)
2 1939 bp 40.95 4.95 100.10
qh_6_scaffold_22172
Species: Haloarcula vallismortis (50%)
2 1930 bp 63.32 13.01 100.10
qh_6_scaffold_20309
Species: Salinibacter ruber (100%)
2 1915 bp 70.18 71.70 100.10
qh_6_scaffold_4962
Species: Halosimplex carlsbadense (100%)
2 2802 bp 67.20 28.84 100.11
qh_6_scaffold_9818
Species: Natronomonas pharaonis (100%)
2 1867 bp 69.42 39.21 100.11
Displaying items 17001-17050 of 17572 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.