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QH_6_UNK

In projects: QH_6  |  diaphorachaeota

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 21.84 Longest contig: 86.52 Kbp Bin length: 43.49 Mbp GC content: 61.40 %
Contigs count: 17572 Features count: 56719 rRNAs count: 11 tRNAs count: 537

Genome completeness

megabin RP 45 / 55 MC: 35 BSCG 42 / 51 MC: 35 ASCG 38 / 38 MC: 38
Displaying items 17101-17150 of 17572 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qh_6_scaffold_10831 3 1754 bp 55.19 5.53 39.00
qh_6_scaffold_17026
Species: Halosimplex carlsbadense (50%)
2 1272 bp 59.75 11.24 38.92
qh_6_scaffold_11437 4 2203 bp 65.46 18.79 38.90
qh_6_scaffold_14722
Species: Rhodothermus marinus (50%)
2 1419 bp 62.58 25.72 38.90
qh_6_scaffold_12318
Species: Microcoleus vaginatus (50%)
2 1612 bp 42.00 53.29 38.90
qh_6_scaffold_17142
Species: Phaeomoniella chlamydospora (50%)
2 1265 bp 52.09 7.19 38.89
qh_6_scaffold_11886
Species: Cyanothece sp. PCC 7424 (100%)
1 1652 bp 45.88 37.47 38.86
qh_6_scaffold_21100 2 1066 bp 65.01 19.98 38.84
qh_6_scaffold_20180
Species: Halosimplex carlsbadense (50%)
2 1107 bp 45.08 6.32 38.75
qh_6_scaffold_16678
Species: Salinibacter ruber (66.67%)
3 1294 bp 61.05 58.47 38.72
qh_6_scaffold_11897
Species: Nitrosomonas europaea (50%)
2 1651 bp 66.51 8.18 38.70
qh_6_scaffold_19815 1 1124 bp 47.86 7.03 38.70
qh_6_scaffold_14815 2 1412 bp 55.24 8.36 38.67
qh_6_scaffold_15267 2 1381 bp 57.49 5.58 38.67
qh_6_scaffold_12226
Species: halophilic archaeon J07HB67 (50%)
2 1622 bp 63.69 12.76 38.66
qh_6_scaffold_22379
Species: Halococcus hamelinensis (50%)
2 1417 bp 69.94 62.67 38.53
qh_6_scaffold_18768
Species: Natrinema pellirubrum (100%)
1 1176 bp 54.42 12.59 38.52
qh_6_scaffold_32422 1 1472 bp 47.35 6.45 38.52
qh_6_scaffold_3039 4 5382 bp 51.80 7.21 38.52
qh_6_scaffold_19381
Species: Natrialba hulunbeirensis (50%)
2 1145 bp 64.98 11.70 38.25
qh_6_scaffold_21861 2 1036 bp 58.98 6.85 38.22
qh_6_scaffold_21189 3 2112 bp 46.54 6.58 38.21
qh_6_scaffold_35166
Species: Haloquadratum walsbyi (50%)
2 1076 bp 72.40 54.37 38.20
qh_6_scaffold_20961
Species: Candidatus Nanosalinarum sp. J07AB56 (50%)
2 1918 bp 58.92 15.33 38.16
qh_6_scaffold_22443 2 1769 bp 52.40 8.93 38.16
qh_6_scaffold_12854
Species: Halomicrobium mukohataei (50%)
2 1565 bp 51.12 7.48 38.15
qh_6_scaffold_20993
Species: halophilic archaeon J07HX64 (50%)
2 1070 bp 61.40 11.59 38.13
qh_6_scaffold_16760 3 1288 bp 63.82 6.68 38.12
qh_6_scaffold_18780 4 2479 bp 57.16 11.74 38.12
qh_6_scaffold_5530 6 4086 bp 51.49 7.37 38.11
qh_6_scaffold_16437 3 1307 bp 50.19 7.27 38.10
qh_6_scaffold_18029
Species: Haloferax mucosum (50%)
2 2038 bp 68.89 48.07 37.98
qh_6_scaffold_23898
Species: Marinobacter algicola (100%)
1 1572 bp 49.17 6.87 37.98
qh_6_scaffold_7519
Species: Salinibacter ruber (50%)
2 2204 bp 62.52 47.05 37.98
qh_6_scaffold_15875 5 3795 bp 39.00 124.58 37.94
qh_6_scaffold_29785
Species: halophilic archaeon J07HB67 (50%)
2 1468 bp 61.85 9.33 37.94
qh_6_scaffold_12208 2 1623 bp 51.26 6.96 37.89
qh_6_scaffold_21398
Species: Halococcus thailandensis (100%)
1 1053 bp 54.13 8.36 37.89
qh_6_scaffold_10786
Species: Haloarcula hispanica (50%)
2 1759 bp 65.15 9.38 37.86
qh_6_scaffold_9899 3 1856 bp 49.57 7.54 37.82
qh_6_scaffold_1230 10 10510 bp 59.10 19.90 37.82
qh_6_scaffold_18800
Species: Halorubrum saccharovorum (50%)
2 1174 bp 62.69 12.18 37.82
qh_6_scaffold_8692 3 2534 bp 52.60 30.94 37.77
qh_6_scaffold_5821 4 3290 bp 50.12 8.21 37.75
qh_6_scaffold_21167 2 1063 bp 59.08 8.56 37.72
qh_6_scaffold_19359
Species: Microcystis aeruginosa (100%)
1 1146 bp 46.77 49.83 37.70
qh_6_scaffold_5187
Species: CG_Elusi_03 (100%)
1 2731 bp 48.11 7.76 37.68
qh_6_scaffold_23021 3 1761 bp 59.11 5.05 37.65
qh_6_scaffold_18841
Species: Halorubrum terrestre (50%)
2 1172 bp 52.13 9.39 37.63
qh_6_scaffold_17030 2 2085 bp 55.30 7.05 37.55
Displaying items 17101-17150 of 17572 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.