ggKbase | organisms

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 24.80 Longest contig: 129.40 Kbp Bin length: 65.07 Mbp GC content: 61.69 %

Contigs count: 26699 Features count: 85647 rRNAs count: 16 tRNAs count: 794

Genome completeness

megabin RP 52 / 55 MC: 46 BSCG 46 / 51 MC: 44 ASCG 38 / 38 MC: 38

Displaying items 26101-26150 of 26699 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
qh_8_scaffold_20668 Species: Halostagnicola larsenii (50%)	2	1410 bp	47.59	4.89	100.21
qh_8_scaffold_14737 Species: Halanaeroarchaeum sulfurireducens (50%)	2	3287 bp	57.41	8.64	100.21
qh_8_scaffold_9922 Species: Natrinema gari (50%)	2	2335 bp	64.15	27.88	100.21
qh_8_scaffold_20937 Species: Salinibacter ruber (50%)	2	1395 bp	65.38	31.68	100.22
qh_8_scaffold_21129 Species: Natronomonas pharaonis (50%)	2	1386 bp	66.88	46.25	100.22
qh_8_scaffold_14194 Species: Natronomonas pharaonis (66.67%)	3	1844 bp	71.85	53.90	100.22
qh_8_scaffold_14485 Genus: Haloarcula (66.67%)	3	1817 bp	56.36	10.68	100.22
qh_8_scaffold_7828 Species: Halococcus thailandensis (100%)	3	2721 bp	57.96	16.72	100.22
qh_8_scaffold_14520 Species: Natronomonas pharaonis (66.67%)	3	1814 bp	64.61	7.61	100.22
qh_8_scaffold_21785 Species: Halosimplex carlsbadense (100%)	2	1353 bp	71.54	27.94	100.22
qh_8_scaffold_21846	2	1350 bp	70.81	44.59	100.22
qh_8_scaffold_22025 Species: Halosimplex carlsbadense (100%)	2	1341 bp	69.20	12.90	100.22
qh_8_scaffold_8025 Species: Halococcus salifodinae (100%)	3	2679 bp	70.81	64.91	100.22
qh_8_scaffold_15258 Species: Halorhabdus tiamatea (50%)	2	1757 bp	64.31	9.56	100.23
qh_8_scaffold_22577 Species: Salinarchaeum sp. Harcht-Bsk1 (50%)	2	1314 bp	63.93	9.13	100.23
qh_8_scaffold_15318 Species: Candidatus Halobonum tyrrellensis (50%)	2	1751 bp	68.99	15.71	100.23
qh_8_scaffold_15351 Species: Natrialba hulunbeirensis (50%)	2	1748 bp	60.24	9.27	100.23
qh_8_scaffold_22721 Species: Halorubrum aidingense (50%)	2	1308 bp	75.15	75.76	100.23
qh_8_scaffold_15513 Species: Halosimplex carlsbadense (100%)	2	1736 bp	69.99	12.62	100.23
qh_8_scaffold_15591 Species: Halosimplex carlsbadense (100%)	2	1730 bp	73.53	24.97	100.23
qh_8_scaffold_22963 Species: Natrialba hulunbeirensis (50%)	2	1296 bp	51.54	6.87	100.23
qh_8_scaffold_22979 Species: Halorhabdus utahensis (50%)	2	1296 bp	62.96	9.95	100.23
qh_8_scaffold_23175 Species: Halococcus saccharolyticus (100%)	2	1287 bp	65.66	29.91	100.23
qh_8_scaffold_23537 Species: Natronomonas pharaonis (50%)	2	1272 bp	66.82	37.97	100.24
qh_8_scaffold_23548 Species: halophilic archaeon J07HX64 (50%)	2	1272 bp	69.50	14.15	100.24
qh_8_scaffold_23573 Species: Salinibacter ruber (50%)	2	1272 bp	67.61	7.86	100.24
qh_8_scaffold_23574 Species: Halostagnicola sp. A56 (50%)	2	1272 bp	64.47	62.81	100.24
qh_8_scaffold_23688	2	1266 bp	66.90	18.96	100.24
qh_8_scaffold_24332 Species: Natronomonas pharaonis (100%)	2	1682 bp	74.14	56.54	100.24
qh_8_scaffold_11695 Species: Natronomonas pharaonis (50%)	2	2101 bp	68.25	32.46	100.24
qh_8_scaffold_23840 Species: Halorhabdus tiamatea (50%)	2	1260 bp	74.44	15.08	100.24
qh_8_scaffold_23850 Species: Salinibacter ruber (50%)	2	1260 bp	68.49	9.29	100.24
qh_8_scaffold_24042 Species: Haloarcula japonica (50%)	2	1251 bp	71.46	22.70	100.24
qh_8_scaffold_54112 Domain: Viruses (66.67%)	3	1664 bp	62.62	5.89	100.24
qh_8_scaffold_24106 Species: Halosimplex carlsbadense (100%)	2	1248 bp	64.42	7.13	100.24
qh_8_scaffold_11897 Species: Haloquadratum walsbyi (66.67%)	3	2080 bp	69.18	16.39	100.24
qh_8_scaffold_16626 Species: Halorhabdus tiamatea (50%)	2	1652 bp	72.64	15.98	100.24
qh_8_scaffold_38463 Species: halophilic archaeon DL31 (50%)	2	1233 bp	69.02	10.95	100.24
qh_8_scaffold_24483 Species: Halogranum salarium (50%)	2	1233 bp	70.48	9.65	100.24
qh_8_scaffold_24562 Species: Halobiforma lacisalsi (50%)	2	1230 bp	69.84	55.37	100.24
qh_8_scaffold_31442 Species: Halococcus salifodinae (100%)	2	1631 bp	60.15	10.79	100.25
qh_8_scaffold_16961	2	1628 bp	55.22	8.42	100.25
qh_8_scaffold_24947 Species: Natronorubrum bangense (50%)	2	1215 bp	65.02	11.60	100.25
qh_8_scaffold_12538 Order: Halobacteriales (55.56%)	9	3232 bp	66.83	15.69	100.25
qh_8_scaffold_41166 Species: Natronococcus occultus (50%)	2	1206 bp	65.75	9.87	100.25
qh_8_scaffold_48440 Species: halophilic archaeon DL31 (50%)	2	1206 bp	75.37	26.12	100.25
qh_8_scaffold_13287 Species: Halosimplex carlsbadense (75%)	4	2397 bp	73.05	39.20	100.25
qh_8_scaffold_41758 Species: Haloterrigena salina (50%)	2	1194 bp	71.61	18.17	100.25
qh_8_scaffold_25676 Species: Haloarcula hispanica (50%)	2	1188 bp	67.17	11.28	100.25
qh_8_scaffold_4064 Phylum: Verrucomicrobia (57.14%)	7	7487 bp	57.55	9.50	100.25

Displaying items 26101-26150 of 26699 in total

QH_8_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

QH_8_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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