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QH_8_Viridiplantae_38_104

QH_8_Chlorophyta_38_104

In projects: QH_8

Consensus taxonomy: Chlorophyta → Viridiplantae

Taxonomy override: Eukaryote

Metagenomic Context

Parent: QH_8_UNK

Properties

Avg. coverage: 103.68 Longest contig: 4.23 Kbp Bin length: 31.87 Kbp GC content: 38.40 %

Contigs count: 15 Features count: 51 rRNAs count: 0 tRNAs count: 5

Genome completeness

partial RP 5 / 55 MC: 2 BSCG 5 / 51 MC: 2 ASCG 0 / 38

Displaying 15 items

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
qh_8_scaffold_12269 Phylum: Chlorophyta (50%)	8	3420 bp	37.13	106.19	69.71
qh_8_scaffold_38639 Phylum: Chlorophyta (80%)	5	1799 bp	36.02	108.38	95.89
qh_8_scaffold_7254 Domain: Viridiplantae (60%)	5	3836 bp	39.49	92.74	90.95
qh_8_scaffold_12993 Phylum: Chlorophyta (60%)	5	2498 bp	36.75	121.14	92.23
qh_8_scaffold_11993 Phylum: Chlorophyta (50%)	4	2068 bp	36.03	141.54	99.52
qh_8_scaffold_18955 Order: Mamiellales (50%)	4	4230 bp	40.87	85.89	55.60
qh_8_scaffold_36324 Domain: Viridiplantae (50%)	4	1444 bp	36.77	99.52	83.93
qh_8_scaffold_23837 Phylum: Streptophyta (66.67%)	3	1900 bp	37.63	89.89	89.37
qh_8_scaffold_13465 Domain: Viridiplantae (66.67%)	3	1912 bp	40.69	99.06	100.26
qh_8_scaffold_31313 Species: Ostreococcus tauri (50%)	2	1010 bp	37.23	113.47	96.24
qh_8_scaffold_18953 Species: Ostreococcus tauri (50%)	2	2278 bp	37.84	104.30	102.46
qh_8_scaffold_24936 Species: Koliella longiseta (50%)	2	1215 bp	35.14	128.56	97.53
qh_8_scaffold_21126 Species: Chlamydomonas moewusii (50%)	2	1386 bp	42.14	77.42	72.29
qh_8_scaffold_19288 Species: Pyramimonas parkeae (100%)	1	1483 bp	40.19	117.26	99.93
qh_8_scaffold_33986 Species: Ostreococcus tauri (100%)	1	1391 bp	39.04	99.35	97.92

Displaying 15 items

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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