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QH_9_Viridiplantae_55_6

QH_9_Eukaryota_55_6
In projects: QH_9

Consensus taxonomy: Eukaryota

Taxonomy override: Eukaryote

Metagenomic Context

Parent: QH_9_UNK

Properties

Avg. coverage: 5.72 Longest contig: 4.41 Kbp Bin length: 1.43 Mbp GC content: 54.59 %
Contigs count: 890 Features count: 1610 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 14 / 55 MC: 1 BSCG 8 / 51 MC: 4 ASCG 8 / 38 MC: 1
Displaying items 151-200 of 890 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qh_9_scaffold_26491
Species: Ostreococcus tauri (50%)
2 2139 bp 47.45 4.86 45.58
qh_9_scaffold_20834
Species: Chlamydomonas reinhardtii (50%)
2 1186 bp 59.78 6.83 92.33
qh_9_scaffold_24311
Species: Ostreococcus 'lucimarinus' (50%)
2 1062 bp 55.46 6.21 67.51
qh_9_scaffold_23310
Species: Micromonas sp. RCC299 (50%)
2 1094 bp 57.77 5.94 97.08
qh_9_scaffold_15075
Species: Chlorella pyrenoidosa (50%)
2 1469 bp 53.85 5.58 87.61
qh_9_scaffold_21714
Species: Micromonas pusilla (50%)
2 1152 bp 59.29 6.25 69.01
qh_9_scaffold_15307
Species: Micromonas pusilla (50%)
2 1453 bp 49.62 5.16 64.62
qh_9_scaffold_5829
Species: Chlorella variabilis (50%)
2 2621 bp 56.81 5.53 94.89
qh_9_scaffold_9940
Species: Amborella trichopoda (50%)
2 1905 bp 54.65 6.19 82.36
qh_9_scaffold_10008
Species: Tetraselmis sp. GSL018 (100%)
2 2488 bp 51.21 4.30 100.56
qh_9_scaffold_14365
Species: Selaginella moellendorffii (50%)
2 1517 bp 58.14 5.67 67.63
qh_9_scaffold_25909
Species: Micromonas pusilla (50%)
2 1013 bp 50.84 7.50 61.01
qh_9_scaffold_9251
Species: Tetraselmis sp. GSL018 (50%)
2 1987 bp 56.67 5.18 61.00
qh_9_scaffold_15499
Species: Ostreococcus 'lucimarinus' (50%)
2 1442 bp 53.68 6.03 73.65
qh_9_scaffold_42141
Species: Ostreococcus 'lucimarinus' (50%)
2 1292 bp 58.13 5.88 64.32
qh_9_scaffold_7388
Species: Micromonas pusilla (50%)
2 2278 bp 55.84 5.71 62.82
qh_9_scaffold_25680
Species: Setaria italica (50%)
2 1020 bp 56.57 5.10 59.12
qh_9_scaffold_9484
Species: Bathycoccus prasinos (50%)
2 1958 bp 57.10 4.85 79.98
qh_9_scaffold_11352
Species: Ostreococcus tauri (50%)
2 1757 bp 54.41 5.35 74.62
qh_9_scaffold_15082
Species: Phaseolus vulgaris (50%)
2 1468 bp 56.61 6.20 99.32
qh_9_scaffold_20129
Species: Bathycoccus prasinos (50%)
2 1214 bp 55.27 6.26 100.58
qh_9_scaffold_21533
Species: Tetraselmis sp. GSL018 (100%)
2 1159 bp 59.28 4.66 67.04
qh_9_scaffold_30616
Species: Chlorella variabilis (50%)
2 1305 bp 53.26 6.51 100.46
qh_9_scaffold_15500
Species: Bathycoccus prasinos (50%)
2 1442 bp 58.04 5.83 93.41
qh_9_scaffold_21303
Species: Musa acuminata (50%)
2 1168 bp 51.80 6.68 97.09
qh_9_scaffold_13450
Species: Tetraselmis sp. GSL018 (50%)
2 1581 bp 56.93 6.83 69.45
qh_9_scaffold_20846
Species: Picea sitchensis (50%)
2 1185 bp 53.33 4.89 68.86
qh_9_scaffold_9719
Species: Tetraselmis sp. GSL018 (100%)
2 3464 bp 55.43 5.83 96.74
qh_9_scaffold_20364
Species: Coccomyxa subellipsoidea (50%)
2 1787 bp 52.66 6.94 85.62
qh_9_scaffold_23634
Species: Volvox carteri (50%)
2 1084 bp 50.00 5.63 94.37
qh_9_scaffold_31824
Species: Selaginella moellendorffii (50%)
2 1540 bp 55.91 5.06 78.51
qh_9_scaffold_15968
Species: Ostreococcus tauri (50%)
2 1412 bp 52.34 5.59 90.09
qh_9_scaffold_12533
Species: Monoraphidium neglectum (50%)
2 1651 bp 57.84 6.30 80.86
qh_9_scaffold_17372
Species: Monoraphidium neglectum (50%)
2 1339 bp 57.65 9.11 43.24
qh_9_scaffold_17602
Species: Chlorella variabilis (50%)
2 1328 bp 60.62 5.95 101.88
qh_9_scaffold_20599
Species: Tetraselmis sp. GSL018 (50%)
2 1195 bp 58.16 6.44 99.67
qh_9_scaffold_17374
Species: Micromonas pusilla (50%)
2 1339 bp 54.14 6.42 78.86
qh_9_scaffold_20139
Species: Hordeum vulgare (50%)
2 1214 bp 51.40 5.44 60.79
qh_9_scaffold_31848
Species: Monoraphidium neglectum (50%)
2 1833 bp 46.92 5.46 50.90
qh_9_scaffold_6917
Species: Physcomitrella patens (50%)
2 2371 bp 54.28 6.03 73.26
qh_9_scaffold_26152
Species: Coccomyxa subellipsoidea (50%)
2 1006 bp 54.97 5.96 58.15
qh_9_scaffold_20140
Species: Ostreococcus 'lucimarinus' (50%)
2 1214 bp 60.30 5.02 91.19
qh_9_scaffold_21963
Species: Ostreococcus 'lucimarinus' (50%)
2 1143 bp 47.16 6.39 62.73
qh_9_scaffold_18069
Species: Setaria italica (50%)
2 1305 bp 52.95 5.44 74.71
qh_9_scaffold_21965
Species: Ostreococcus tauri (50%)
2 2124 bp 56.87 6.64 42.37
qh_9_scaffold_28635
Species: Micromonas sp. RCC299 (50%)
2 1553 bp 57.12 5.60 89.83
qh_9_scaffold_9268
Species: Ostreococcus 'lucimarinus' (50%)
2 1986 bp 59.72 5.14 83.23
qh_9_scaffold_11367
Species: Micromonas pusilla (50%)
2 1755 bp 52.54 6.21 81.54
qh_9_scaffold_13231
Species: Micromonas pusilla (50%)
2 1597 bp 59.11 5.89 69.32
qh_9_scaffold_19453
Species: Micromonas sp. RCC299 (50%)
2 1241 bp 58.50 5.32 95.49
Displaying items 151-200 of 890 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.