ggKbase home page

qs_1_scaffold_1131_29

Organism: QS_1_Actinobacteria_72_13

near complete RP 47 / 55 BSCG 47 / 51 MC: 4 ASCG 13 / 38 MC: 1
Location: 25735..26262

Top 3 Functional Annotations

Value Algorithm Source
16S rRNA-processing protein RimM n=1 Tax=Nocardiopsis alkaliphila RepID=UPI00034B53CF similarity UNIREF
DB: UNIREF100
  • Identity: 44.1
  • Coverage: 170.0
  • Bit_score: 110
  • Evalue 2.00e-21
rimM; 16S rRNA-processing protein RimM similarity KEGG
DB: KEGG
  • Identity: 43.5
  • Coverage: 177.0
  • Bit_score: 108
  • Evalue 2.10e-21
Ribosome maturation factor RimM {ECO:0000255|HAMAP-Rule:MF_00014}; TaxID=326424 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia alni (strain ACN14a).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 43.5
  • Coverage: 177.0
  • Bit_score: 108
  • Evalue 1.10e-20

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Frankia alni → Frankia → Frankiales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 528
GTGGCCCACGAAGGGGCGCCCGTCGGGGGGACGCCCGTGCGGCTGGGGGTCGTCGGTCCCGCCCACGGGATTCGCGGTGACGTCGTGGTCCACCCCGATGCCGACTTGGCCGACCTCGTTGAGCCCGGGCGGGTGTGCTGGCGCGCCCACGGCGAGGCGCTGGAGATCGCCGAGGTGCGCCAGCACAAGCAGCGCACCCTGGTGCGCTTTGTCGGCATCGAGGACCGCACGGCGGCCGAGGCGCTGCGCGGCACCGTGCTGGAGCTCGATCCGGCCGAGGTCGAGCCCGACGAGGACACGCTGTGGGTCGAGAGGCTGGTGGGCGCGGCGGTCGTCGACGACGCCGGGACGGCGGTCGGCGCCGTGCAGCGAGTCGACGACGGGCCGGGCCATGACTGGTTGGTCGTGGCCGCCGATGATCGCGAGGCGATGGTGCCGCTGGTCGACGAGCTCGTCGACGTCGACATGGAGGCCGGGCGGATCACGGTCCATGCGCTGCCGGGGTTGCTCGACGACGACTGGATGTGA
PROTEIN sequence
Length: 176
VAHEGAPVGGTPVRLGVVGPAHGIRGDVVVHPDADLADLVEPGRVCWRAHGEALEIAEVRQHKQRTLVRFVGIEDRTAAEALRGTVLELDPAEVEPDEDTLWVERLVGAAVVDDAGTAVGAVQRVDDGPGHDWLVVAADDREAMVPLVDELVDVDMEAGRITVHALPGLLDDDWM*