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QS_3_UNK

In projects: QS_3  |  diaphorachaeota

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 33.55 Longest contig: 287.80 Kbp Bin length: 28.72 Mbp GC content: 59.97 %
Contigs count: 10204 Features count: 37439 rRNAs count: 6 tRNAs count: 360

Genome completeness

megabin RP 29 / 55 MC: 19 BSCG 30 / 51 MC: 20 ASCG 31 / 38 MC: 25
Displaying items 1-50 of 10204 in total
contig # features sequence size GC content (%) Cov Coding Density (%) notes
qs_3_scaffold_8499 3 1279 bp 56.37 2.89 85.85
qs_3_scaffold_9269 2 1198 bp 49.92 3.01 100.92
qs_3_scaffold_11334 1 1022 bp 48.34 3.13 10.27
qs_3_scaffold_7524 2 1393 bp 47.74 3.16 31.87
qs_3_scaffold_8694 2 1258 bp 54.37 3.18 67.73
qs_3_scaffold_6801 3 1505 bp 61.59 3.19 105.25
qs_3_scaffold_8513
Species: Halorubrum lacusprofundi (50%)
2 1278 bp 46.79 3.21 74.41
qs_3_scaffold_11308 1 1024 bp 43.95 3.22 39.26
qs_3_scaffold_10925
Species: Rhodovulum sp. PH10 (100%)
1 1054 bp 54.55 3.23 71.44
qs_3_scaffold_9821
Species: Aphanomyces astaci (50%)
2 1146 bp 49.04 3.23 55.50
qs_3_scaffold_9066 1 1217 bp 42.81 3.29 83.07
qs_3_scaffold_10456 1 1091 bp 44.91 3.30 45.65
qs_3_scaffold_9908 2 1137 bp 58.40 3.34 76.78
qs_3_scaffold_7957 2 1341 bp 53.09 3.36 24.83
qs_3_scaffold_9085
Order: Haloferacales (66.67%)
3 1215 bp 59.42 3.37 88.15
qs_3_scaffold_4683 3 2029 bp 53.52 3.45 84.28
qs_3_scaffold_6018 1 1665 bp 50.39 3.48 8.83
qs_3_scaffold_11638 1 1003 bp 48.35 3.49 54.14
qs_3_scaffold_8952 1 1229 bp 57.20 3.50 99.84
qs_3_scaffold_9988 2 1130 bp 50.18 3.54 49.38
qs_3_scaffold_11092 1 1042 bp 54.70 3.55 52.69
qs_3_scaffold_10687 3 1071 bp 52.57 3.55 49.86
qs_3_scaffold_9408 2 1184 bp 48.56 3.55 39.27
qs_3_scaffold_10405 2 1095 bp 53.33 3.56 82.19
qs_3_scaffold_8379
Species: RBG_16_OP11_Woesebacteria_34_12_curated (100%)
1 1291 bp 54.84 3.56 99.69
qs_3_scaffold_10101 1 1120 bp 57.05 3.57 99.64
qs_3_scaffold_10085 1 1121 bp 52.19 3.57 55.40
qs_3_scaffold_11188
Species: Candidatus Halobonum tyrrellensis (50%)
2 1033 bp 49.56 3.58 79.28
qs_3_scaffold_4528 6 2089 bp 53.14 3.59 94.06
qs_3_scaffold_11269 1 1027 bp 53.26 3.60 9.93
qs_3_scaffold_11319 2 1023 bp 51.52 3.62 58.06
qs_3_scaffold_10283 1 1105 bp 51.22 3.62 71.67
qs_3_scaffold_10288 2 1105 bp 50.68 3.62 105.61
qs_3_scaffold_10990 2 1050 bp 55.05 3.62 38.86
qs_3_scaffold_8881 2 1237 bp 56.18 3.64 76.39
qs_3_scaffold_9746
Species: Haloferax volcanii (100%)
1 1153 bp 53.69 3.64 99.65
qs_3_scaffold_6229 3 1620 bp 51.48 3.64 72.78
qs_3_scaffold_9176 1 1206 bp 42.04 3.65 99.25
qs_3_scaffold_5810
Species: Salpingoeca rosetta (100%)
1 1718 bp 52.44 3.67 99.88
qs_3_scaffold_9845 1 1144 bp 54.37 3.67 70.54
qs_3_scaffold_10501 2 1087 bp 50.32 3.68 64.58
qs_3_scaffold_10506 2 1086 bp 59.58 3.68 82.32
qs_3_scaffold_10894 1 1055 bp 49.29 3.70 16.49
qs_3_scaffold_7868
Species: Lyngbya aestuarii (100%)
1 1350 bp 51.26 3.70 99.78
qs_3_scaffold_9932 1 1135 bp 51.01 3.70 28.28
qs_3_scaffold_9658
Species: Ancylostoma duodenale (50%)
2 1161 bp 52.54 3.70 75.71
qs_3_scaffold_8125
Species: Danio rerio (100%)
1 1321 bp 52.91 3.71 48.15
qs_3_scaffold_7677
Species: Caprimulgus carolinensis (50%)
2 1373 bp 56.96 3.71 99.42
qs_3_scaffold_9665
Species: Pseudanabaena sp. PCC 7367 (50%)
2 1160 bp 55.17 3.71 99.57
qs_3_scaffold_8868
Species: Novosphingobium sp. AP12 (50%)
2 1238 bp 55.74 3.72 98.38
Displaying items 1-50 of 10204 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.