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QS_4_Halobacteriales_69_14

In projects: QS_4  |  diaphorachaeota  |  archaea_ggkbase

Consensus taxonomy: Halobacteriales  →  Halobacteria  →  Euryarchaeota  →  Archaea

Taxonomy override: Euryarchaeota

Metagenomic Context

Parent: QS_4_UNK

Properties

Avg. coverage: 14.31 Longest contig: 32.47 Kbp Bin length: 1.89 Mbp GC content: 69.15 %
Contigs count: 302 Features count: 2161 rRNAs count: 0 tRNAs count: 18

Genome completeness

partial RP 20 / 55 MC: 1 BSCG 16 / 51 MC: 1 ASCG 21 / 38
Displaying items 1-50 of 302 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qs_4_scaffold_6549
Order: Halobacteriales (60%)
5 4756 bp 69.53 14.00 53.30
qs_4_scaffold_4992
Order: Halobacteriales (50%)
4 3464 bp 65.47 11.78 55.77
qs_4_scaffold_2738
Class: Halobacteria (100%)
7 5654 bp 64.41 10.56 57.99
qs_4_scaffold_3439
Order: Halobacteriales (83.33%)
6 5188 bp 68.47 12.66 60.25
qs_4_scaffold_3552
Class: Halobacteria (85.71%)
7 4502 bp 63.73 12.02 60.35
qs_4_scaffold_814
Class: Halobacteria (80.95%)
21 22015 bp 67.80 13.07 62.13
qs_4_scaffold_4805
Class: Halobacteria (80%)
5 3577 bp 67.37 14.87 63.04
qs_4_scaffold_6805
Class: Halobacteria (60%)
5 4046 bp 62.85 13.42 64.51
qs_4_scaffold_10254
Order: Halobacteriales (60%)
5 3459 bp 72.10 14.05 65.48
qs_4_scaffold_3214
Class: Halobacteria (62.5%)
8 4929 bp 62.43 11.12 65.67
qs_4_scaffold_3474
Order: Halobacteriales (62.5%)
8 4595 bp 67.66 11.95 66.33
qs_4_scaffold_4988
Order: Halobacteriales (50%)
4 3468 bp 71.83 14.13 66.35
qs_4_scaffold_6680
Class: Halobacteria (75%)
8 5304 bp 68.51 15.23 67.59
qs_4_scaffold_4197
Class: Halobacteria (60%)
5 4775 bp 69.30 13.32 67.92
qs_4_scaffold_2179
Order: Halobacteriales (63.64%)
11 7887 bp 65.44 15.04 67.93
qs_4_scaffold_3055
Order: Halobacteriales (60%)
10 5129 bp 69.31 13.47 68.32
qs_4_scaffold_9337
Order: Haloferacales (50%)
4 3101 bp 68.07 14.61 68.40
qs_4_scaffold_4655
Order: Halobacteriales (50%)
6 3666 bp 66.23 13.75 68.99
qs_4_scaffold_4528
Order: Halobacteriales (100%)
3 3744 bp 68.06 12.82 69.15
qs_4_scaffold_3470
Class: Halobacteria (70%)
10 7844 bp 69.43 13.92 69.38
qs_4_scaffold_6427
Order: Halobacteriales (58.33%)
12 10345 bp 69.82 15.73 69.42
qs_4_scaffold_4522
Order: Natrialbales (85.71%)
7 5458 bp 70.87 15.74 69.59
qs_4_scaffold_2653
Order: Halobacteriales (54.55%)
11 5837 bp 66.22 13.62 69.64
qs_4_scaffold_10460
Order: Haloferacales (66.67%)
6 4052 bp 67.52 12.98 69.82
qs_4_scaffold_4809
Order: Halobacteriales (71.43%)
7 5052 bp 71.77 14.29 70.25
qs_4_scaffold_2812
Order: Halobacteriales (83.33%)
6 5533 bp 70.03 15.20 70.32
qs_4_scaffold_2176
Class: Halobacteria (50%)
6 6967 bp 69.04 12.14 70.40
qs_4_scaffold_4773
Order: Halobacteriales (85.71%)
7 3592 bp 63.22 13.61 70.41
qs_4_scaffold_4257
Class: Halobacteria (66.67%)
3 3932 bp 67.57 11.90 70.50
qs_4_scaffold_5780
Order: Halobacteriales (60%)
5 3093 bp 68.83 13.64 70.51
qs_4_scaffold_5357
Order: Halobacteriales (66.67%)
3 3280 bp 66.46 10.15 70.79
qs_4_scaffold_2380
Class: Halobacteria (81.82%)
11 8924 bp 70.34 14.74 71.10
qs_4_scaffold_2769
Order: Halobacteriales (55.56%)
9 6164 bp 64.45 11.84 71.69
qs_4_scaffold_10731
Class: Halobacteria (75%)
8 3383 bp 66.66 12.83 71.74
qs_4_scaffold_4468
Class: Halobacteria (66.67%)
9 5948 bp 71.22 13.85 71.77
qs_4_scaffold_2488
Order: Halobacteriales (66.67%)
6 6161 bp 71.61 15.14 71.97
qs_4_scaffold_7350
Order: Halobacteriales (80%)
5 6090 bp 71.82 13.69 71.97
qs_4_scaffold_3601
Order: Haloferacales (60%)
5 4451 bp 70.57 15.23 72.32
qs_4_scaffold_5211
Class: Halobacteria (60%)
5 4722 bp 72.81 13.55 72.45
qs_4_scaffold_2341
Class: Halobacteria (83.33%)
6 6522 bp 69.21 15.01 72.82
qs_4_scaffold_5632
Order: Haloferacales (50%)
4 3162 bp 62.21 11.07 72.87
qs_4_scaffold_7032
Species: Haladaptatus paucihalophilus (50%)
4 4603 bp 66.54 11.95 72.93
qs_4_scaffold_8747
Order: Halobacteriales (62.5%)
8 3330 bp 65.23 11.71 73.15
qs_4_scaffold_7936
Order: Haloferacales (50%)
6 3396 bp 67.87 12.54 73.41
qs_4_scaffold_4619
Order: Natrialbales (50%)
4 3683 bp 69.21 14.01 73.47
qs_4_scaffold_3159
Class: Halobacteria (70%)
10 6349 bp 65.65 11.47 73.90
qs_4_scaffold_2220
Order: Halobacteriales (50%)
8 10487 bp 68.14 13.46 74.15
qs_4_scaffold_2404
Class: Halobacteria (81.82%)
11 9004 bp 69.05 13.05 74.23
qs_4_scaffold_4917
Species: Halococcus morrhuae (50%)
4 3512 bp 65.03 10.31 74.32
qs_4_scaffold_3472
Order: Halobacteriales (63.64%)
11 8552 bp 70.67 14.64 74.68
Displaying items 1-50 of 302 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.