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QS_5_Halobacteria_72_15

In projects: QS_5  |  diaphorachaeota  |  archaea_ggkbase

Consensus taxonomy: Halobacteria  →  Euryarchaeota  →  Archaea

Taxonomy override: Euryarchaeota

Metagenomic Context

Parent: QS_5_UNK

Properties

Avg. coverage: 15.14 Longest contig: 11.42 Kbp Bin length: 659.72 Kbp GC content: 72.05 %
Contigs count: 144 Features count: 791 rRNAs count: 0 tRNAs count: 6

Genome completeness

partial RP 19 / 55 MC: 2 BSCG 15 / 51 ASCG 15 / 38 MC: 1
Displaying items 1-50 of 144 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qs_5_scaffold_5773
Class: Halobacteria (100%)
7 4950 bp 71.15 17.98 100.18
qs_5_scaffold_5139
Order: Halobacteriales (66.67%)
3 3156 bp 74.65 15.40 100.10
qs_5_scaffold_3236
Species: Halorhabdus tiamatea (50%)
2 4182 bp 69.89 16.43 100.00
qs_5_scaffold_11949
Order: Halobacteriales (75%)
4 3184 bp 74.78 14.42 99.31
qs_5_scaffold_9105
Order: Haloferacales (50%)
4 4200 bp 71.64 13.69 98.71
qs_5_scaffold_7142
Class: Halobacteria (80%)
5 5067 bp 70.28 16.58 96.92
qs_5_scaffold_9497
Domain: Archaea (60%)
5 4197 bp 71.72 15.46 96.78
qs_5_scaffold_1378
Order: Halobacteriales (61.54%)
13 11423 bp 70.62 15.74 96.67
qs_5_scaffold_4847
Order: Halobacteriales (62.5%)
8 3277 bp 70.70 18.10 96.61
qs_5_scaffold_2900
Species: Halobiforma nitratireducens (75%)
4 4453 bp 71.57 16.35 96.61
qs_5_scaffold_5959
Order: Halobacteriales (75%)
4 4303 bp 75.46 16.04 96.21
qs_5_scaffold_5675
Order: Haloferacales (60%)
5 4513 bp 74.72 15.89 95.66
qs_5_scaffold_6648
Order: Halobacteriales (50%)
4 3445 bp 73.03 15.91 95.36
qs_5_scaffold_9745
Order: Natrialbales (66.67%)
3 3663 bp 69.04 15.67 95.33
qs_5_scaffold_3878
Order: Halobacteriales (66.67%)
3 4350 bp 72.92 14.94 94.83
qs_5_scaffold_5200
Order: Natrialbales (66.67%)
3 3133 bp 71.27 15.23 94.80
qs_5_scaffold_5423
Species: Halobacterium sp. DL1 (66.67%)
3 3045 bp 71.92 14.88 94.58
qs_5_scaffold_2097
Order: Halobacteriales (53.85%)
13 8605 bp 72.81 13.40 94.45
qs_5_scaffold_6667
Order: Natrialbales (66.67%)
3 3244 bp 73.37 13.16 94.33
qs_5_scaffold_6123
Order: Halobacteriales (60%)
5 4874 bp 70.87 14.55 94.23
qs_5_scaffold_5239
Species: Halosimplex carlsbadense (50%)
2 3121 bp 71.32 16.18 94.20
qs_5_scaffold_4883
Species: Haloarcula vallismortis (50%)
4 4221 bp 70.79 17.79 93.96
qs_5_scaffold_12019
Species: Halomicrobium mukohataei (50%)
4 3585 bp 71.63 15.20 93.89
qs_5_scaffold_3037
Domain: Archaea (50%)
8 4902 bp 71.93 13.93 93.82
qs_5_scaffold_4240
Order: Halobacteriales (50%)
4 3548 bp 73.11 17.19 93.43
qs_5_scaffold_3254
Class: Halobacteria (80%)
5 4170 bp 73.17 14.36 93.31
qs_5_scaffold_9946
Order: Halobacteriales (60%)
5 3113 bp 69.03 15.42 93.29
qs_5_scaffold_5301
Order: Halobacteriales (50%)
6 9426 bp 69.05 17.14 93.16
qs_5_scaffold_3248
Class: Halobacteria (100%)
3 4176 bp 73.25 17.12 93.10
qs_5_scaffold_4381
Class: Halobacteria (75%)
4 3483 bp 71.92 14.96 92.85
qs_5_scaffold_6621
Order: Halobacteriales (50%)
4 4197 bp 74.98 14.22 92.64
qs_5_scaffold_3326
Class: Halobacteria (85.71%)
7 4111 bp 74.09 15.20 92.53
qs_5_scaffold_5176
Class: Halobacteria (80%)
5 3743 bp 72.83 14.64 92.41
qs_5_scaffold_5389
Order: Halobacteriales (50%)
6 4660 bp 71.89 15.84 92.19
qs_5_scaffold_6084
Class: Halobacteria (50%)
4 4199 bp 72.16 15.29 92.16
qs_5_scaffold_4117
Order: Natrialbales (50%)
4 4457 bp 71.08 16.89 92.08
qs_5_scaffold_7111
Order: Natrialbales (60%)
5 5348 bp 71.13 14.06 91.94
qs_5_scaffold_8175
Order: Halobacteriales (50%)
6 3672 bp 71.84 16.53 91.91
qs_5_scaffold_6067
Species: Halococcus salifodinae (50%)
2 3808 bp 74.47 15.28 91.78
qs_5_scaffold_1785
Class: Halobacteria (71.43%)
7 5957 bp 72.70 15.86 91.71
qs_5_scaffold_11113
Class: Halobacteria (83.33%)
6 5148 bp 72.49 14.70 91.38
qs_5_scaffold_3370
Order: Halobacteriales (75%)
4 4085 bp 70.75 16.79 91.06
qs_5_scaffold_2064
Order: Halobacteriales (55.56%)
9 5466 bp 71.95 18.35 90.82
qs_5_scaffold_1922
Class: Halobacteria (85.71%)
7 5685 bp 69.18 13.86 90.71
qs_5_scaffold_15631
Species: Halosimplex carlsbadense (57.14%)
7 3886 bp 75.42 14.23 90.63
qs_5_scaffold_8872
Order: Halobacteriales (50%)
10 5509 bp 74.26 15.67 90.56
qs_5_scaffold_4486
Class: Halobacteria (80%)
5 3430 bp 71.17 15.07 90.52
qs_5_scaffold_7138
Class: Halobacteria (75%)
12 8039 bp 72.30 15.24 90.46
qs_5_scaffold_3927
Order: Natrialbales (50%)
4 3720 bp 72.96 14.76 90.40
qs_5_scaffold_4373
Order: Halobacteriales (50%)
4 3487 bp 73.04 13.99 90.25
Displaying items 1-50 of 144 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.