ggKbase | organisms

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 24.01 Longest contig: 255.34 Kbp Bin length: 53.74 Mbp GC content: 62.24 %

Contigs count: 17166 Features count: 68256 rRNAs count: 6 tRNAs count: 714

Genome completeness

megabin RP 51 / 55 MC: 48 BSCG 45 / 51 MC: 39 ASCG 38 / 38 MC: 38

Displaying items 451-500 of 17166 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
qs_9_scaffold_9958 Species: Haloarcula japonica (50%)	2	2022 bp	67.85	17.46	100.15
qs_9_scaffold_12186 Species: Halonotius sp. J07HN6 (50%)	2	2711 bp	60.42	6.86	100.15
qs_9_scaffold_15263 Species: Halococcus saccharolyticus (50%)	2	1357 bp	69.12	8.11	100.15
qs_9_scaffold_15194 Species: Halomicrobium mukohataei (100%)	2	1363 bp	65.96	10.05	100.15
qs_9_scaffold_14995 Species: Salinibacter ruber (50%)	2	1378 bp	62.26	40.93	100.15
qs_9_scaffold_22439 Species: Natronomonas moolapensis (50%)	2	1402 bp	72.47	31.24	100.14
qs_9_scaffold_9467 Species: Natronomonas moolapensis (50%)	2	2115 bp	69.98	18.30	100.14
qs_9_scaffold_14526 Species: Halogeometricum pallidum (50%)	2	1420 bp	72.25	161.34	100.14
qs_9_scaffold_14350 Species: Halomicrobium mukohataei (100%)	2	1438 bp	63.21	9.81	100.14
qs_9_scaffold_14175 Species: Natronomonas moolapensis (50%)	2	1456 bp	68.20	9.20	100.14
qs_9_scaffold_26117 Phylum: Parcubacteria (66.67%)	3	1477 bp	54.43	4.40	100.13
qs_9_scaffold_13704 Species: Candidatus Nanosalina sp. J07AB43 (50%)	2	1507 bp	47.64	8.43	100.13
qs_9_scaffold_13359 Species: Haloferax volcanii (50%)	2	1546 bp	60.54	7.31	100.13
qs_9_scaffold_13081 Species: Halococcus thailandensis (100%)	2	1576 bp	58.82	7.99	100.13
qs_9_scaffold_12450 Species: Haloterrigena salina (100%)	2	1648 bp	50.55	4.43	100.12
qs_9_scaffold_12430 Species: Halogeometricum pallidum (50%)	2	1651 bp	69.65	9.39	100.12
qs_9_scaffold_7854 Species: halophilic archaeon J07HX64 (50%)	2	2493 bp	67.55	30.61	100.12
qs_9_scaffold_17642 Species: Natronomonas moolapensis (100%)	2	1678 bp	67.40	106.85	100.12
qs_9_scaffold_12195 Species: Natrialba aegyptia (50%)	2	1681 bp	63.12	6.60	100.12
qs_9_scaffold_12111	3	1693 bp	62.26	6.79	100.12
qs_9_scaffold_7602 Species: Halobacterium sp. DL1 (50%)	2	2559 bp	67.10	11.18	100.12
qs_9_scaffold_18873 Species: Natronomonas pharaonis (50%)	2	1759 bp	71.35	26.15	100.11
qs_9_scaffold_11610 Species: Haloarcula marismortui (50%)	2	1762 bp	68.27	7.89	100.11
qs_9_scaffold_11611 Order: Halobacteriales (66.67%)	3	1762 bp	67.25	12.03	100.11
qs_9_scaffold_7195 Species: Halobiforma lacisalsi (50%)	2	2673 bp	67.60	8.34	100.11
qs_9_scaffold_11452 Species: GWE2_Bacteroidetes_39_28_curated (50%)	2	1783 bp	50.42	4.54	100.11
qs_9_scaffold_13731 Genus: Natronomonas (66.67%)	3	2685 bp	66.52	72.63	100.11
qs_9_scaffold_11193 Domain: Bacteria (66.67%)	3	1819 bp	62.62	5.33	100.11
qs_9_scaffold_6869 Species: Halorhabdus tiamatea (66.67%)	3	2781 bp	64.72	9.17	100.11
qs_9_scaffold_6482 Species: Paenibacillus curdlanolyticus (50%)	2	2910 bp	55.81	33.30	100.10
qs_9_scaffold_10285 Species: Haloarcula argentinensis (50%)	2	1966 bp	61.34	24.72	100.10
qs_9_scaffold_20663 Species: Natronomonas pharaonis (50%)	2	1001 bp	71.83	28.87	100.10
qs_9_scaffold_20548 Species: Halovivax ruber (50%)	2	1007 bp	71.90	5.96	100.10
qs_9_scaffold_20506 Species: Halogeometricum borinquense (50%)	2	1010 bp	67.43	7.33	100.10
qs_9_scaffold_9970 Species: halophilic archaeon J07HB67 (50%)	2	2020 bp	63.86	21.83	100.10
qs_9_scaffold_20311 Species: Synechococcus sp. PCC 7335 (50%)	2	1019 bp	54.56	5.69	100.10
qs_9_scaffold_20132 Species: halophilic archaeon J07HX64 (100%)	2	1031 bp	62.95	6.21	100.10
qs_9_scaffold_19638 Species: Natronomonas pharaonis (50%)	2	1058 bp	72.87	23.25	100.10
qs_9_scaffold_19584 Species: Halanaeroarchaeum sulfurireducens (50%)	2	1061 bp	58.25	4.24	100.09
qs_9_scaffold_19545 Species: Halorubrum coriense (50%)	2	1064 bp	72.56	24.34	100.09
qs_9_scaffold_19483 Species: Halorhabdus tiamatea (50%)	2	1067 bp	69.63	9.56	100.09
qs_9_scaffold_18905 Species: Natronomonas moolapensis (50%)	2	2137 bp	65.65	93.37	100.09
qs_9_scaffold_19439 Species: Haloarcula marismortui (100%)	2	1070 bp	53.74	4.77	100.09
qs_9_scaffold_19441 Species: Candidatus Halobonum tyrrellensis (50%)	2	1070 bp	69.53	20.37	100.09
qs_9_scaffold_19162 Species: Haloarcula californiae (100%)	2	1085 bp	62.86	7.65	100.09
qs_9_scaffold_19009 Species: Halosimplex carlsbadense (50%)	2	1094 bp	71.94	54.02	100.09
qs_9_scaffold_18841 Species: Halobacterium salinarum (100%)	2	1103 bp	62.47	24.84	100.09
qs_9_scaffold_18738 Species: Halorhabdus tiamatea (50%)	2	1109 bp	67.36	8.30	100.09
qs_9_scaffold_18387 Species: Bacteroides sp. CAG:1060 (50%)	2	1130 bp	50.27	4.69	100.09
qs_9_scaffold_17900 Species: Halorubrum kocurii (100%)	2	1160 bp	67.24	8.19	100.09

Displaying items 451-500 of 17166 in total

QS_9_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

QS_9_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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